PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_21320A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 843aa    MW: 92115.1 Da    PI: 6.1527
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_21320AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.2e-182987357
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               k  ++t+eq+e+Le+l+  +++ps ++r++L +++    +++ +q+kvWFqNrR ++k+
  Oropetium_20150105_21320A 29 KYVRYTPEQVEVLERLYIDCPKPSSSRRQQLLRECpilaNIEPKQIKVWFQNRRCRDKQ 87
                               5678****************************************************996 PP
2START160.71.1e-501673752205
                                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEE CS
                      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevi 85 
                                +aee+ +e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++++ e+l d++  W +++++ e+   +
  Oropetium_20150105_21320A 167 IAEETFTEFLSKATGTAIDWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVIEILKDRP-SWFRDCRSLEVFTML 249
                                789999****************************************************7777777777.*************** PP

                                CTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEE CS
                      START  86 ssg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghsk 163
                                  g  g+++l +++++a+++lvp Rdf+++Ry+ ++++g++v++++S++     p+    +++vRae+lpSg+l++p+++g+s 
  Oropetium_20150105_21320A 250 PAGngGTIELVYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPSaasAQQFVRAEMLPSGYLVRPCEGGGSI 333
                                *9999********************************************9999999898899********************** PP

                                EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                      START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                                v++v+h dl++++++++lr+l++s+++ ++k+++ +l+++++
  Oropetium_20150105_21320A 334 VHIVDHLDLEAWSVPEVLRPLYESSRVVAQKMTTVALRHLRQ 375
                                *********************************999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.2892488IPR001356Homeobox domain
SMARTSM003895.3E-152692IPR001356Homeobox domain
SuperFamilySSF466899.41E-162890IPR009057Homeodomain-like
CDDcd000861.27E-152989No hitNo description
PfamPF000466.3E-163087IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-173187IPR009057Homeodomain-like
CDDcd146863.78E-681120No hitNo description
PROSITE profilePS5084827.25157385IPR002913START domain
CDDcd088754.73E-72161377No hitNo description
SuperFamilySSF559612.75E-37166378No hitNo description
SMARTSM002341.8E-38166376IPR002913START domain
Gene3DG3DSA:3.30.530.201.5E-21166350IPR023393START-like domain
PfamPF018521.7E-48167375IPR002913START domain
PfamPF086703.3E-50699841IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MAAAVAMRGG SSDSGGGFDK VSGGMDSGKY VRYTPEQVEV LERLYIDCPK PSSSRRQQLL  60
RECPILANIE PKQIKVWFQN RRCRDKQRKE SSRLQAVNRK LTAMNKLLME ENERLQKQVS  120
HLVHENAHMR QQLQTTSLAN DTSCESNVTT PPNPMRDASN PSGLLSIAEE TFTEFLSKAT  180
GTAIDWVQMP GMKPGPDSVG IVAISHGCRG VAARACGLVN LEPTKVIEIL KDRPSWFRDC  240
RSLEVFTMLP AGNGGTIELV YMQMYAPTTL VPARDFWTLR YTTTMEDGSL VVCERSLSGS  300
GGGPSAASAQ QFVRAEMLPS GYLVRPCEGG GSIVHIVDHL DLEAWSVPEV LRPLYESSRV  360
VAQKMTTVAL RHLRQIAQET SGEVVYALGR QPAVLRTFSQ RLSRGFNDAI SGFNDDGWSI  420
MGGDGIEDVV VACNSTKKIR NNGNAGVTFG TPGGIICAKA SMLLQSVPPA VLVRFLREHR  480
SEWADYNIDA YLASALKASA CSLPGLRPMR FSGGQMILPL AHTVENEEIL EVVRLEGQSL  540
THDEALLSRD IHLLQLCTGI DEKSVGSSFQ LVFAPIDEHF PDDAPLISSG FRVIPLDIKT  600
DAVSSGRTLD LASSLDVGSA TAQASGDGSS DECNLRSVLT IAFQFPYELH LQDSVATMAR  660
QYVRSVVSAV QRVSMAISPS QSGLNSGQRV LSGFPEAATL ARWVCQSYQY HLGVELLNQS  720
DEAGEALLKM LWHHPDAILC CSFKEKPMFT FANKAGLDML ETSLIALQDL TLDKIFDESG  780
RKALFSDISK LMEQGYVYLP SGVCMSGMGR HVSFDQAVAW KVLGEDSNVH CLAFCFVNWS  840
FV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_21320A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2865260.0DQ286526.1 Zea mays rolled leaf 2 (rld2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468669.10.0homeobox-leucine zipper protein HOX10 isoform X2
SwissprotA2XBL90.0HOX10_ORYSI; Homeobox-leucine zipper protein HOX10
TrEMBLC5WMP70.0C5WMP7_SORBI; Uncharacterized protein
STRINGSb01g050000.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein