PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_21222A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

GRAS

Protein Properties

Length: 709aa MW: 73871.6 Da PI: 5.6517

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_21222A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	258.5	2.3e-79	350	707	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 + L ++A+a ++g+ a+++Larl+++ p g+p+ R a+y+ eAL la+ + +p +s+ ++ +laa+k f + Oropetium_20150105_21222A 350 DELAAAAKAAEAGNSIGAREILARLNHQLPPLGKPFLRSASYLREALLLALAD-----GHHGAPGLNSPLDVFLKLAAYKSFAD 428 7899***********************************************.....555566666677799******* PP GRAS 87 vsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetger 164 +sP+l+f+++ta qaIl++++g+ +++H+iDfd++ G+QW+++lq+La R+ + p +++ +++s+ s++ el+ +++ Oropetium_20150105_21222A 429 LSPVLQFTNFTATQAILDEISGStaSCIHVIDFDLGVGGQWASFLQELAHRRcagsAALPFVKLSAFVSAVSHHPLELRLARDN 512 ******************98899******************99987766689******************** PP GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqead 247 +++fA+ lg+pfefn++ +++++++ e+ + +E++aV+l + + + +L+lvk+l Pk+vv v++ d Oropetium_20150105_21222A 513 ISQFAADLGIPFEFNAV---NVDAFNPAEFISPTgDEVIAVSLPVGCSARA---PP----LPVILRLVKQLGPKIVVAVDNGGD 586 ************8...999999999966558*****9777665...44....556***************** PP GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331 + + +F ++ l++++ ++ l+dsl++ + +++ + k+E++l++++i+++v + + + + Wr+++ +aGF pvp s+ Oropetium_20150105_21222A 587 RADLPFSQHYLNCFQSCVFLLDSLDSA-GIDADSAGKIEKFLIQPRIEDAVLGRCKL-----DKPMAWRSAFAAAGFVPVPPSN 664 ********************877.7899***************988776.....7899************** PP GRAS 332 kaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 a++qa++ll++v+++g++ve+ l+l+W++ +Lv+vSaWr Oropetium_20150105_21222A 665 LAEAQADCLLKRVQVRGFHVEKCGTGLTLYWQRGELVTVSAWR 707 ****************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	39.787	322	687	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.0E-77	350	707	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence Send to blast
MRAALFGAER SGAADLVGGG KTLFWPDGKT ALVEPRSVLD CTRSPSPNNS TSTLSSSLGS 60 GAADSTGGVA AVSDNSAAAA EATKWGASGE NGGGGGKEDW AGGCDLPPIP GGLDMGLVGG 120 ESWDAVLGNA AAAGQDQTFL NWIIGAAGDL DQPGSTLQVH QQVLLDNAGF GFPTTADPMG 180 FSLDPHLGGV ASDLSSPGAV SHTSNSGGGS KTSSAFGLFS PESASLQPPP PMLFHEGIDT 240 KPPLLAAAQP PGLLHHYQHQ PPPPASTFFM PLPSFTDHNQ QSPLLQPPPK CHQSLADDLY 300 LARNRLPAAQ GLPFPPIHGP APFQLQPSPP PPRGAMKTTA AEAAQQQLLD ELAAAAKAAE 360 AGNSIGAREI LARLNHQLPP LGKPFLRSAS YLREALLLAL ADGHHGAPGL NSPLDVFLKL 420 AAYKSFADLS PVLQFTNFTA TQAILDEISG STASCIHVID FDLGVGGQWA SFLQELAHRR 480 CAGSAALPFV KLSAFVSAVS HHPLELRLAR DNISQFAADL GIPFEFNAVN VDAFNPAEFI 540 SPTGDEVIAV SLPVGCSARA PPLPVILRLV KQLGPKIVVA VDNGGDRADL PFSQHYLNCF 600 QSCVFLLDSL DSAGIDADSA GKIEKFLIQP RIEDAVLGRC KLDKPMAWRS AFAAAGFVPV 660 PPSNLAEAQA DCLLKRVQVR GFHVEKCGTG LTLYWQRGEL VTVSAWRR*

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence Send to blast

MRAALFGAER SGAADLVGGG KTLFWPDGKT ALVEPRSVLD CTRSPSPNNS TSTLSSSLGS  60
GAADSTGGVA AVSDNSAAAA EATKWGASGE NGGGGGKEDW AGGCDLPPIP GGLDMGLVGG  120
ESWDAVLGNA AAAGQDQTFL NWIIGAAGDL DQPGSTLQVH QQVLLDNAGF GFPTTADPMG  180
FSLDPHLGGV ASDLSSPGAV SHTSNSGGGS KTSSAFGLFS PESASLQPPP PMLFHEGIDT  240
KPPLLAAAQP PGLLHHYQHQ PPPPASTFFM PLPSFTDHNQ QSPLLQPPPK CHQSLADDLY  300
LARNRLPAAQ GLPFPPIHGP APFQLQPSPP PPRGAMKTTA AEAAQQQLLD ELAAAAKAAE  360
AGNSIGAREI LARLNHQLPP LGKPFLRSAS YLREALLLAL ADGHHGAPGL NSPLDVFLKL  420
AAYKSFADLS PVLQFTNFTA TQAILDEISG STASCIHVID FDLGVGGQWA SFLQELAHRR  480
CAGSAALPFV KLSAFVSAVS HHPLELRLAR DNISQFAADL GIPFEFNAVN VDAFNPAEFI  540
SPTGDEVIAV SLPVGCSARA PPLPVILRLV KQLGPKIVVA VDNGGDRADL PFSQHYLNCF  600
QSCVFLLDSL DSAGIDADSA GKIEKFLIQP RIEDAVLGRC KLDKPMAWRS AFAAAGFVPV  660
PPSNLAEAQA DCLLKRVQVR GFHVEKCGTG LTLYWQRGEL VTVSAWRR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-21	348	707	4	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_21222A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022682654.1	0.0	scarecrow-like protein 27
TrEMBL	A0A368PPT9	0.0	A0A368PPT9_SETIT; Uncharacterized protein
STRING	Si016508m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2020	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	7e-80	GRAS family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_21222A