PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_21171A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | C2H2 | ||||||||
Protein Properties | Length: 195aa MW: 22033.2 Da PI: 9.9679 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.1 | 3.5e-06 | 62 | 84 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Oropetium_20150105_21171A 62 FVCEVCNKGFQREQNLQLHRRGH 84 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.4 | 0.00022 | 139 | 161 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + Oropetium_20150105_21171A 139 WKCDKCSKRYAVQSDWKAHSKIC 161 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.1E-8 | 61 | 84 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-6 | 61 | 84 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0041 | 62 | 84 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.094 | 62 | 84 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 9.3E-6 | 62 | 84 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 64 | 84 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 150 | 104 | 134 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.7E-5 | 127 | 160 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.1E-8 | 134 | 159 | No hit | No description |
SMART | SM00355 | 140 | 139 | 159 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MASNSSAAAV AALFGIRDGD HHEQMKPLLV QQHQQSPMAP FNDPDAEVIS LSPKTLMATN 60 RFVCEVCNKG FQREQNLQLH RRGHNLPWKL KQKDPLQAQR RRVYTCPEPT CAHHDPARAL 120 GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV QSDWKAHSKI CGTREYRCDC GTLFSRPSQL 180 VAIRGSHGAE TFRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 9e-23 | 135 | 184 | 3 | 52 | Zinc finger protein JACKDAW |
5b3h_F | 9e-23 | 135 | 184 | 3 | 52 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_21171A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061050 | 1e-152 | BT061050.1 Zea mays full-length cDNA clone ZM_BFb0091K24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824078.1 | 1e-103 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_025824079.1 | 1e-103 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_025824080.1 | 1e-103 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_025824082.1 | 1e-103 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_025824083.1 | 1e-103 | protein indeterminate-domain 5, chloroplastic-like | ||||
Swissprot | O22759 | 9e-86 | IDD12_ARATH; Protein indeterminate-domain 12 | ||||
TrEMBL | A0A1E5V9G2 | 1e-107 | A0A1E5V9G2_9POAL; Protein indeterminate-domain 6, chloroplastic | ||||
STRING | Pavir.Aa00824.1.p | 1e-104 | (Panicum virgatum) | ||||
STRING | Pavir.Gb01057.1.p | 1e-103 | (Panicum virgatum) | ||||
STRING | LPERR02G22320.1 | 1e-103 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02670.1 | 3e-87 | indeterminate(ID)-domain 12 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_21171A |
Publications ? help Back to Top | |||
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