PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_21127A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

GRAS

Protein Properties

Length: 638aa MW: 66743.3 Da PI: 10.1236

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_21127A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	305.5	1.2e-93	265	637	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalkl 83 ++ L +++ av++g++++a a La l+ a+p+gd+ qRl+a+++ AL++r+ pps+++ + sse+ aa +l Oropetium_20150105_21127A 265 RQMLSDAVAAVADGNQTAAVAHLAVLKISANPRGDAEQRLVAMMASALSSRVGP--------GPPSPQHLADlcSSEQRAACQL 340 688999*********************************************9........44444444444599999* PP GRAS 84 fsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg....skeel 158 +++vsP++ ++ aN aIl+av+ + +H++Dfd+s +Q +aL+qaL +R+ + +slRiT+v++p+s +++l Oropetium_20150105_21127A 341 LHDVSPCFGLALHGANLAILDAVAYNhrAIIHVVDFDVSV-AQHMALIQALGNRRraaGAGASLRITAVADPTSPftpaAAQAL 423 ********************9965567***96.7******9887755667*****998889999 PP GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242 +t+erL++ A++ gv+f+f++ v+ r e+++ ++L +++gE+laVnl+++l r++desvs +++rde+L+ v+ l P+vv++v Oropetium_20150105_21127A 424 ASTAERLKRQAQQAGVEFRFQA-VSCRAEEIDASRLGCRQGEVLAVNLAFALSRVPDESVSPANPRDELLRRVRALAPRVVTLV 506 ******************.799****************************************************** PP GRAS 243 eqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326 eqe+++n++++++rf++a+ +y a+++sl+a+++r+s +r+ E + l++++ n+va ega+r+er+e ++kWr+r+++aG++p Oropetium_20150105_21127A 507 EQELNTNTAPLAARFADACAHYGAVLESLDATVGRDSAQRARAESA-LANKAANAVAREGADRVERCEVFGKWRARFGMAGLRP 589 ******************************************.99******************************* PP GRAS 327 vplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 v++++ +a+ +k+ l + g+ v+ +sg l + W++r ++++SaWr Oropetium_20150105_21127A 590 VEIGQGVADRVKARLGPAARPGFGVKLDSGRLGISWMGRVVTVASAWR 637 *********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.381	238	617	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.3E-91	265	637	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 638 aa Download sequence Send to blast
MEPAGWYDDP RRGYGYGYGV GPAVDAPSSM SRQQQPPRPN APAVASGGVL KRSLTDMERW 60 QQALYFRAVK QRTAALVQPP LQQLDIGAVL AGAAVSARTG RFSGPPSAGL AGLSAQPSST 120 LSSALTTASR VATPPPMQKL SQRHVTAAPS SQTAQPVASG AANTARELVL LQELEKQLLG 180 XXXXXXXXXX XXXGSACGST VTNSCWGETI QELNTITLPT HPKTSVVNNN YSIVPVSRSP 240 SNSTSSTTSS TASSSPPTPA ASSSRQMLSD AVAAVADGNQ TAAVAHLAVL KISANPRGDA 300 EQRLVAMMAS ALSSRVGPGP PSPQHLADLC SSEQRAACQL LHDVSPCFGL ALHGANLAIL 360 DAVAYNHRAI IHVVDFDVSV AQHMALIQAL GNRRRAAGAG ASLRITAVAD PTSPFTPAAA 420 QALASTAERL KRQAQQAGVE FRFQAVSCRA EEIDASRLGC RQGEVLAVNL AFALSRVPDE 480 SVSPANPRDE LLRRVRALAP RVVTLVEQEL NTNTAPLAAR FADACAHYGA VLESLDATVG 540 RDSAQRARAE SALANKAANA VAREGADRVE RCEVFGKWRA RFGMAGLRPV EIGQGVADRV 600 KARLGPAARP GFGVKLDSGR LGISWMGRVV TVASAWR*

Sequence ? help Back to Top

Protein Sequence Length: 638 aa Download sequence Send to blast

MEPAGWYDDP RRGYGYGYGV GPAVDAPSSM SRQQQPPRPN APAVASGGVL KRSLTDMERW  60
QQALYFRAVK QRTAALVQPP LQQLDIGAVL AGAAVSARTG RFSGPPSAGL AGLSAQPSST  120
LSSALTTASR VATPPPMQKL SQRHVTAAPS SQTAQPVASG AANTARELVL LQELEKQLLG  180
XXXXXXXXXX XXXGSACGST VTNSCWGETI QELNTITLPT HPKTSVVNNN YSIVPVSRSP  240
SNSTSSTTSS TASSSPPTPA ASSSRQMLSD AVAAVADGNQ TAAVAHLAVL KISANPRGDA  300
EQRLVAMMAS ALSSRVGPGP PSPQHLADLC SSEQRAACQL LHDVSPCFGL ALHGANLAIL  360
DAVAYNHRAI IHVVDFDVSV AQHMALIQAL GNRRRAAGAG ASLRITAVAD PTSPFTPAAA  420
QALASTAERL KRQAQQAGVE FRFQAVSCRA EEIDASRLGC RQGEVLAVNL AFALSRVPDE  480
SVSPANPRDE LLRRVRALAP RVVTLVEQEL NTNTAPLAAR FADACAHYGA VLESLDATVG  540
RDSAQRARAE SALANKAANA VAREGADRVE RCEVFGKWRA RFGMAGLRPV EIGQGVADRV  600
KARLGPAARP GFGVKLDSGR LGISWMGRVV TVASAWR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-37	283	637	22	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_21127A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953458.1	0.0	scarecrow-like protein 8
TrEMBL	A0A0A9FCJ7	0.0	A0A0A9FCJ7_ARUDO; Uncharacterized protein
STRING	Si016627m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4188	34	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	3e-66	SCARECROW-like 8

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_21127A