PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_21122A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 374aa    MW: 40210.1 Da    PI: 10.0306
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_21122AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3971.2e-3057150189
                                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 
                                f+kv tpsdv+k++rlv+pk++ae++       g+ e++  l++ed+ g++W+++++y+++s++yv+tkGW++Fvk+++L +gD
  Oropetium_20150105_21122A  57 FDKVVTPSDVGKLNRLVIPKQYAEKYfpldaaAGN-EKGLLLSFEDSAGKQWRFRYSYWNSSQSYVMTKGWSRFVKEKRLVAGD 139
                                89*****************************7444.57789******************************************* PP

                                EEEEEE-SSSE CS
                         B3  79 fvvFkldgrse 89 
                                +v F++   ++
  Oropetium_20150105_21122A 140 TVSFSRGAAED 150
                                *****653333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-4050164IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-3154164IPR015300DNA-binding pseudobarrel domain
CDDcd100176.15E-2755145No hitNo description
PfamPF023626.3E-2857158IPR003340B3 DNA binding domain
SMARTSM010191.7E-2157163IPR003340B3 DNA binding domain
PROSITE profilePS5086314.83357161IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MTASSSAAAS VSSASASASA SSSAPFRSAS GDGAGASGSG AGGEGAAGES VEKEHMFDKV  60
VTPSDVGKLN RLVIPKQYAE KYFPLDAAAG NEKGLLLSFE DSAGKQWRFR YSYWNSSQSY  120
VMTKGWSRFV KEKRLVAGDT VSFSRGAAED ARHRLFIDWK RRTDSRDPFR FPRLALPMPS  180
HYGPHHYSPW SFGGGGAGFF MPPSPPATLY EHRLRQGLDF RGMNYHHSAA AVGRQLLFFG  240
SARTMPPHAP PTILPRAPSP LHYTMMQVQP TSSAASPVVL DSVPVIESPS TAAKRVRLFG  300
VNLDNQEPGG GEPSNVPGNA LSLQTPGWQR RTPALRLHEL PHRQVNIANN GATTAHKTFV  360
LLLGIYGGEE DEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A9e-56521623113B3 domain-containing transcription factor NGA1
5os9_B9e-56521623113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_21122A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794708.11e-156B3 domain-containing protein Os02g0683500-like
SwissprotQ6EU301e-134Y2835_ORYSJ; B3 domain-containing protein Os02g0683500
TrEMBLA0A3L6QFE01e-156A0A3L6QFE0_PANMI; Uncharacterized protein
STRINGPavir.Aa00929.1.p1e-155(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-60B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]