PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_21110A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

MYB_related

Protein Properties

Length: 459aa MW: 49092.4 Da PI: 8.2979

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_21110A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.7	4.2e-16	53	97	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++G W++I ++g ++t+ q++s+ qk+ Oropetium_20150105_21110A 53 REKWTEDEHKRFLEALQLHGRA-WRRIQGHIG-TKTAVQIRSHAQKF 97 789***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.09E-14	47	100	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.494	48	102	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.2E-15	51	100	IPR006447	Myb domain, plants
SMART	SM00717	1.3E-11	52	100	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-13	53	96	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-8	53	93	IPR009057	Homeodomain-like
CDD	cd00167	6.40E-9	55	98	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MTCFETKTMA TDENGENAMD HGNNPPGPGG MDVSGDEHAP KQARKPYTIT KQREKWTEDE 60 HKRFLEALQL HGRAWRRIQG HIGTKTAVQI RSHAQKFFTK VVTLVRESSG SSSGTGAAPA 120 IQIPPPRPKR KPARPYPRKV DGADRKHAPV LKHLEKPQAP GMQSLREQDD GSPTSVLTAA 180 QTVSRADAMG GVFSNTSIGG SRSPAPSVAG SDEHGNGGGS SVDREEDVEA AELAVRASNT 240 KAFSDTKDCT GSEASVFKLF GKKVAVNDSY QHLQNGRNLK MDASPACVTQ TTRSAIPFAG 300 NSWNPWPSNM QQLMYFFPGP DGFAAQSVMP WLGYNGSIPC SLFYPQAVAS NQQNHQHHQL 360 SESPDQREGS LTGSNTGSSV APASAAQNSE AVESHAEQGN ASESVKAPAV KLLSKCPSSA 420 STNRRGFMPY KRCAAESQEP RSVAPGEEAD GELTRLCL*

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MTCFETKTMA TDENGENAMD HGNNPPGPGG MDVSGDEHAP KQARKPYTIT KQREKWTEDE  60
HKRFLEALQL HGRAWRRIQG HIGTKTAVQI RSHAQKFFTK VVTLVRESSG SSSGTGAAPA  120
IQIPPPRPKR KPARPYPRKV DGADRKHAPV LKHLEKPQAP GMQSLREQDD GSPTSVLTAA  180
QTVSRADAMG GVFSNTSIGG SRSPAPSVAG SDEHGNGGGS SVDREEDVEA AELAVRASNT  240
KAFSDTKDCT GSEASVFKLF GKKVAVNDSY QHLQNGRNLK MDASPACVTQ TTRSAIPFAG  300
NSWNPWPSNM QQLMYFFPGP DGFAAQSVMP WLGYNGSIPC SLFYPQAVAS NQQNHQHHQL  360
SESPDQREGS LTGSNTGSSV APASAAQNSE AVESHAEQGN ASESVKAPAV KLLSKCPSSA  420
STNRRGFMPY KRCAAESQEP RSVAPGEEAD GELTRLCL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_21110A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953478.1	0.0	protein REVEILLE 2 isoform X2
TrEMBL	A0A1E5VGC7	0.0	A0A1E5VGC7_9POAL; Protein LHY (Fragment)
STRING	Si017289m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2722	36	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37260.1	1e-30	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_21110A