PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_21066A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 168aa    MW: 18204.5 Da    PI: 5.1463
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_21066AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS57.52.9e-1868151692
                       GRAS   6 lecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                                ++c +av+++d+  ++ l+++l +l+s +gdpmqRl ay++e+  arl++s+s lyk+l+++e +   sse +++++l++e++P
  Oropetium_20150105_21066A  68 ITCGKAVAENDMFVTELLVSELGQLVSVSGDPMQRLGAYMLEGVVARLSSSGSMLYKSLKCKEPT---SSELMSYMHLLYEICP 148
                                589*************************************************************9...9*************** PP

                       GRAS  90 ilk 92 
                                ++k
  Oropetium_20150105_21066A 149 FYK 151
                                987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098510.02437167IPR005202Transcription factor GRAS
PfamPF035149.8E-1668151IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MPLGENDRFY AMQNNLDHHY SSSDDGSQRI NSVNPKVSES QYCTLESSVG NGAYPAQSST  60
SSHSISPITC GKAVAENDMF VTELLVSELG QLVSVSGDPM QRLGAYMLEG VVARLSSSGS  120
MLYKSLKCKE PTSSELMSYM HLLYEICPFY KPLQQGLGVH HALESPV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_21066A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983228.14e-47scarecrow-like protein 21
RefseqXP_004983229.14e-47scarecrow-like protein 21
TrEMBLA0A0A9V3N93e-46A0A0A9V3N9_ARUDO; Uncharacterized protein
STRINGPavir.Ia02739.1.p8e-47(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.13e-33scarecrow-like 5