PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_21050A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 220aa MW: 24634.1 Da PI: 4.94 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.5 | 1.3e-19 | 76 | 129 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++q+++Le++Fe +++++ e++e++A+ l+L rqV vWFqNrRa++k Oropetium_20150105_21050A 76 KKRRLAADQVRALERCFEVDNKLDPERKERIARDLRLHPRQVAVWFQNRRARWK 129 4557899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 124.8 | 3.9e-40 | 75 | 167 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 ekkrrl+++qv++LE++Fe ++kL+perK+++ar+L+l+prqvavWFqnrRAR+ktkq+E+d++aL++++dal++e ++L++++ Oropetium_20150105_21050A 75 EKKRRLAADQVRALERCFEVDNKLDPERKERIARDLRLHPRQVAVWFQNRRARWKTKQIERDFAALRARHDALRHECDELRRDK 158 69********************************************************************************** PP HD-ZIP_I/II 85 eeLreelke 93 ++L++e++e Oropetium_20150105_21050A 159 DALAAEIRE 167 ****99986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.84E-19 | 70 | 133 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.309 | 71 | 131 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.9E-19 | 74 | 135 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.7E-17 | 76 | 129 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.99E-14 | 76 | 132 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.6E-19 | 82 | 130 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 106 | 129 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 2.2E-14 | 131 | 172 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence Send to blast |
MKRPACRGSS VVSQETQERQ EDTSSRFMEQ QGLDVNDGTV SAAERNNEAA YDDEEEEEDV 60 DDGEPAAWGR GGLGEKKRRL AADQVRALER CFEVDNKLDP ERKERIARDL RLHPRQVAVW 120 FQNRRARWKT KQIERDFAAL RARHDALRHE CDELRRDKDA LAAEIRELRE KVEKQMAVKL 180 ESSAEDRLLP AAAGAGAAAA AAATAVYKAP DGSTDSDSSA |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 123 | 131 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_21050A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | FP099753 | 1e-109 | FP099753.1 Phyllostachys edulis cDNA clone: bphyem212a11, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792352.1 | 9e-84 | homeobox-leucine zipper protein HOX8-like isoform X1 | ||||
Swissprot | Q338Z7 | 3e-65 | HOX8_ORYSJ; Homeobox-leucine zipper protein HOX8 | ||||
TrEMBL | A0A3L6SDJ8 | 1e-84 | A0A3L6SDJ8_PANMI; Homeobox-leucine zipper protein HOX8-like isoform X1 | ||||
STRING | Pavir.J35191.1.p | 6e-85 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4283 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G40060.1 | 7e-28 | homeobox protein 16 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_21050A |
Publications ? help Back to Top | |||
---|---|---|---|
|