PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_20971A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 368aa    MW: 40119.8 Da    PI: 7.0148
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_20971AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-18130182456
                                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                +++++ eq+++Le+ Fe  +++  e++++LA+ lgL+ rqV +WFqNrRa++k
  Oropetium_20150105_20971A 130 KRRLSVEQVRTLERSFEVANKLEPERKAQLARALGLQPRQVAIWFQNRRARWK 182
                                44799***********************************************9 PP
2HD-ZIP_I/II128.23.5e-41128220193
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                e+krrls eqv++LE+sFe  +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aL+r++da ++en++L +++
  Oropetium_20150105_20971A 128 ERKRRLSVEQVRTLERSFEVANKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALRRQLDAARAENDALLAQN 211
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLreelke 93 
                                ++L++e+++
  Oropetium_20150105_20971A 212 KKLHAEITA 220
                                ****99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.973124184IPR001356Homeobox domain
SuperFamilySSF466894.15E-19125186IPR009057Homeodomain-like
SMARTSM003892.5E-18127188IPR001356Homeobox domain
CDDcd000863.73E-16129185No hitNo description
PfamPF000469.0E-16130182IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.3E-19131191IPR009057Homeodomain-like
PRINTSPR000315.5E-6155164IPR000047Helix-turn-helix motif
PROSITE patternPS000270159182IPR017970Homeobox, conserved site
PRINTSPR000315.5E-6164180IPR000047Helix-turn-helix motif
PfamPF021833.5E-11184223IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MATNGMAPSF FPANFLLQMQ QPLPNHHHHH HHHHHPQEHP HGHHEHEQHL LAPPPPSLSP  60
FLHDFAGAMA PPPHMLSSGK PPMYPPPPPD AAVTSEDLQH PEPPXXXXXX XXXXXXGSAA  120
VGGGCGGERK RRLSVEQVRT LERSFEVANK LEPERKAQLA RALGLQPRQV AIWFQNRRAR  180
WKTKQLEKDY DALRRQLDAA RAENDALLAQ NKKLHAEITA LKXXXXXXXX XXXXRQEAAS  240
ELINLNVKET EASCSNRSEN SSEINLDISR PAADESPMNN NSHRALPFYG GGRSGGGGLD  300
IDQLLQHSHT SAGPKIELGH GGGADTGVAA ATAGGAPAFG SLLCGGAVVD EQPPFWPWPA  360
DGHHNFQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127132ERKRRL
2176184RRARWKTKQ
3290297GGRSGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_20971A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284121e-129KJ728412.1 Zea mays clone pUT6717 HB transcription factor (HB98) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796230.11e-133homeobox-leucine zipper protein HOX23-like
TrEMBLA0A1E5V6C71e-148A0A1E5V6C7_9POAL; Homeobox-leucine zipper protein HOX23
STRINGPavir.Ia02126.1.p1e-143(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-47HD-ZIP family protein