PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_20885A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 439aa    MW: 47532.4 Da    PI: 6.4427
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_20885AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS183.81.2e-5610143072374
                       GRAS  72 knsseelaalklfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg 153
                                 + +e++ a+++f++vsP+++++h+taNqaI+ea++    +r+H++Dfd+s+G++           +e++ slR+Tg+g+    
  Oropetium_20150105_20885A 101 PTRAERFLAYTMFYQVSPLYQLAHFTANQAIVEAFDAGqrRRLHVVDFDVSYGFH-----------DEPAVSLRLTGLGA---- 169
                                34689999***************************97656999**********96...........78999*********.... PP

                       GRAS 154 skeeleetgerLakfAeel.gvpfefnvlvakrledl.....eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLk 229
                                s++el++t+ rL++fA+ + +++fef+ +v+++         + +++ +k+  + +++Vnlv+   r      +++  r+ +L 
  Oropetium_20150105_20885A 170 SADELRQTEARLTRFASGCpNLRFEFEGIVVDDGPISggrhdHDKSIVIKTdgDATVVVNLVFPDARNS---RTTS-SREMLLA 249
                                9***************98769*******9776543333333355666666665889999***9666665...3333.3678*** PP

                       GRAS 230 lvkslsPkvvvvveqeadhnse.......................sFlerflealeyysalfdsleaklpreseerikvErell 290
                                 ++sl+P +v +ve+  d +++                        +l rf+ +l+y++a+fdsl++ lp++s er ++Er  l
  Oropetium_20150105_20885A 250 RLRSLNPSLVFLVENHDDDTDAgsglgsssnddatsrggpattssLLLPRFTTSLRYFAAVFDSLHEYLPADSAERLVIERNHL 333
                                **************986665555679999***************999************************************* PP

                       GRAS 291 greivnvvac...egae..rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk......sdgyrveee.sgslv.lg 361
                                g ei+++va     g++   r+   ++  W+e++e+aGF+ v+ls+++++qaklll++ +      ++g+rv e   g ++ lg
  Oropetium_20150105_20885A 334 GTEICKAVASldvDGDHtaDRASSSSATCWKEMMESAGFEGVTLSSRTVSQAKLLLKMKSgcgdsgGRGFRVIEGdCGRAMsLG 417
                                ********973333444113444556778***************************98642111124569987653444445** PP

                       GRAS 362 WkdrpLvsvSaWr 374
                                W+d +L++++aWr
  Oropetium_20150105_20885A 418 WRDTALITATAWR 430
                                ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.4641402IPR005202Transcription factor GRAS
PfamPF035144.0E-54101430IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MNLTLSLGIS NGGSGRAKKC KLRDVVGDDD VGDGGGDRGR FLIMRLLQAR ERMMASLEPS  60
DQRKVVVSDD DDDAAGGIRL MHLLLSLLLR SPAVASASPL PTRAERFLAY TMFYQVSPLY  120
QLAHFTANQA IVEAFDAGQR RRLHVVDFDV SYGFHDEPAV SLRLTGLGAS ADELRQTEAR  180
LTRFASGCPN LRFEFEGIVV DDGPISGGRH DHDKSIVIKT DGDATVVVNL VFPDARNSRT  240
TSSREMLLAR LRSLNPSLVF LVENHDDDTD AGSGLGSSSN DDATSRGGPA TTSSLLLPRF  300
TTSLRYFAAV FDSLHEYLPA DSAERLVIER NHLGTEICKA VASLDVDGDH TADRASSSSA  360
TCWKEMMESA GFEGVTLSSR TVSQAKLLLK MKSGCGDSGG RGFRVIEGDC GRAMSLGWRD  420
TALITATAWR RRRSWNHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-2910943298381Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_20885A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2432545e-61AC243254.2 Panicum virgatum clone PV_ABa094-K10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975641.11e-164DELLA protein DWARF8
TrEMBLK3Y6Y11e-163K3Y6Y1_SETIT; Uncharacterized protein
STRINGSi009972m1e-164(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116493038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.18e-35GRAS family protein