PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Oropetium_20150105_20800A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 451aa MW: 49624.6 Da PI: 7.0347 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.2 | 2.8e-52 | 10 | 139 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksg 81 +ppGfrFhPtdeel+ +yLkkk+ +k++l evi+evd++k+ePw+L++ ++ + ++ewyfFs++d+ky+tg+r+nrat++g Oropetium_20150105_20800A 10 VPPGFRFHPTDEELLLYYLKKKIGFEKFDL-EVIREVDLNKIEPWELQErcRIGSaPQNEWYFFSHKDRKYPTGSRTNRATTAG 92 69****************************.99**************963433332566************************* PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +Wkatg+dk + + + +++g++ktLvfy+grap+g+ktdW+mheyrle Oropetium_20150105_20800A 93 FWKATGRDKCIRT-SYRKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 139 ************9.8999****************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-60 | 5 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.82 | 10 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-27 | 11 | 138 | IPR003441 | NAC domain |
SuperFamily | SSF51395 | 1.47E-10 | 382 | 449 | No hit | No description |
Gene3D | G3DSA:3.20.20.70 | 1.5E-14 | 400 | 449 | IPR013785 | Aldolase-type TIM barrel |
Pfam | PF00724 | 1.2E-7 | 402 | 444 | IPR001155 | NADH:flavin oxidoreductase/NADH oxidase, N-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0010181 | Molecular Function | FMN binding | ||||
GO:0016491 | Molecular Function | oxidoreductase activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 451 aa Download sequence Send to blast |
MAAFSSSNGV PPGFRFHPTD EELLLYYLKK KIGFEKFDLE VIREVDLNKI EPWELQERCR 60 IGSAPQNEWY FFSHKDRKYP TGSRTNRATT AGFWKATGRD KCIRTSYRKI GMRKTLVFYR 120 GRAPHGQKTD WIMHEYRLEE ADDAQGGTSE DGWVVCRVFK KKCFFKIGGG GGEGSTSQSA 180 DAGGHLAMSP PLQGALASHY MHPHQYYHAA SSYYSQMQQV PAPHTAYSHH VQVQDLLTNH 240 RPTPDAGYDF SGLPVEHPAS AGGLDVGSSD GAVAADGGQL DRDQASGTAA EQQWQAMDGF 300 SNGGAGSAAV QQMTAGAMSS AGQRGGEMDL WGYGRERLRL DFITTHSTGV KLPGLHLELF 360 RCCLRGEADL DCAGTINKMQ IIWQSLTVTC HAVLFTEGYR GGTKEQVEAW KPIVDAVHAK 420 GGIFFCQIWH IGRASDMEKE PISSSDKPVE * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-54 | 10 | 162 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-54 | 10 | 162 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-54 | 10 | 162 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-54 | 10 | 162 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-53 | 10 | 162 | 20 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-53 | 10 | 162 | 20 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-53 | 10 | 162 | 20 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-53 | 10 | 162 | 20 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-53 | 10 | 162 | 20 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-53 | 10 | 162 | 20 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-53 | 10 | 162 | 20 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-53 | 10 | 162 | 20 | 169 | NAC domain-containing protein 19 |
4dul_A | 7e-54 | 10 | 162 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 7e-54 | 10 | 162 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00431 | DAP | Transfer from AT4G10350 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Oropetium_20150105_20800A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU971542 | 0.0 | EU971542.1 Zea mays clone 366845 NAC domain-containing protein 76 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824150.1 | 0.0 | protein BEARSKIN1-like | ||||
Swissprot | Q9SV87 | 1e-109 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | A0A2S3I6V2 | 0.0 | A0A2S3I6V2_9POAL; Uncharacterized protein | ||||
STRING | Si012319m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9297 | 30 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G10350.1 | 3e-88 | NAC domain containing protein 70 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Oropetium_20150105_20800A |
Publications ? help Back to Top | |||
---|---|---|---|
|