PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_20691A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 245aa MW: 25732.2 Da PI: 9.3668 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 64.6 | 3e-20 | 1 | 51 | 77 | 128 |
NAM 77 atksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 at++gyWkatgkdk++++ +++l g kktLvfy+grapkgek+ Wvmheyr+ Oropetium_20150105_20691A 1 ATQAGYWKATGKDKDIFR-GKALLGSKKTLVFYTGRAPKGEKSGWVMHEYRV 51 5899**************.99*****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 29.877 | 1 | 79 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.18E-25 | 2 | 79 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-9 | 2 | 51 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
ATQAGYWKAT GKDKDIFRGK ALLGSKKTLV FYTGRAPKGE KSGWVMHEYR VLGKLSGVSK 60 ASSSSSSKNE WVLCRVFKKS LAGLVVPPPP PAVAAAPKKG AAVEMARMDD MVLAHLPPLM 120 DMSTVNSAAA HVTCFSNALE GQFFNQQTMP QPAAAGSGTD HLSLAASSPF LASSFAQYGQ 180 QGVSLVQLLE GNGYVGEQQV PPPALPSNKQ GERGERLSAS QDTGLTSDVN PEICSSSGQQ 240 LWGY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-17 | 4 | 79 | 95 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-17 | 4 | 79 | 95 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-17 | 4 | 79 | 95 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-17 | 4 | 79 | 95 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-17 | 4 | 79 | 98 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-17 | 4 | 79 | 98 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-17 | 4 | 79 | 98 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-17 | 4 | 79 | 98 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-17 | 4 | 79 | 98 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-17 | 4 | 79 | 98 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-17 | 4 | 79 | 98 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-17 | 4 | 79 | 98 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-17 | 4 | 79 | 95 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-17 | 4 | 79 | 95 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_20691A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968233 | 9e-49 | EU968233.1 Zea mays clone 317195 NAC domain protein NAC5 mRNA, complete cds. | |||
GenBank | FP093111 | 9e-49 | FP093111.1 Phyllostachys edulis cDNA clone: bphyem126o09, full insert sequence. | |||
GenBank | FP097753 | 9e-49 | FP097753.1 Phyllostachys edulis cDNA clone: bphyem208n21, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826317.1 | 7e-95 | NAC domain-containing protein 92-like | ||||
Refseq | XP_025826319.1 | 7e-95 | NAC domain-containing protein 92-like | ||||
Refseq | XP_025826320.1 | 7e-95 | NAC domain-containing protein 92-like | ||||
Refseq | XP_025826321.1 | 7e-95 | NAC domain-containing protein 92-like | ||||
TrEMBL | A0A1E5VC39 | 8e-96 | A0A1E5VC39_9POAL; NAC domain-containing protein 79 (Fragment) | ||||
STRING | Si010553m | 2e-91 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2730 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.2 | 1e-32 | NAC domain containing protein 80 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_20691A |