PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_20580A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | GATA | ||||||||
Protein Properties | Length: 252aa MW: 27209.6 Da PI: 6.8936 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 37.4 | 3.6e-12 | 200 | 237 | 1 | 36 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 C nC++++ Tp++Rrgp+g +t CnaC l+++k++++ Oropetium_20150105_20580A 200 CDNCRASSevTPMMRRGPNGCRTFCNACELMWAKTRKM 237 9*********************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 10.261 | 68 | 103 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 8.651 | 129 | 172 | IPR010402 | CCT domain |
Pfam | PF06203 | 3.9E-11 | 129 | 172 | IPR010402 | CCT domain |
SMART | SM00401 | 1.2E-5 | 194 | 247 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.85E-8 | 195 | 241 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.6E-12 | 199 | 240 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.93E-9 | 199 | 241 | No hit | No description |
Pfam | PF00320 | 1.4E-9 | 200 | 237 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 200 | 227 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MQQPPAPPSS SFSAGAGGGE AEADPFDDYD IVIPPDFLME LDHNDGGAAA LEEDARMGGG 60 GSCNGGGCAE DDDRLSLAYK GFSYVFDSVP PQKVVTILAL LNGLDIAPQS TRRPQLTHLP 120 IVVPQDFDRT AAVSRYREKR KTTLKFDVKA DYSIRREIAS RIARRRGKFV STDKKPDEPA 180 AAASAHHNPQ AEATELALFC DNCRASSEVT PMMRRGPNGC RTFCNACELM WAKTRKMRDL 240 TGPPRGGYGG R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_20580A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828797.1 | 2e-57 | GATA transcription factor 20-like | ||||
TrEMBL | A0A3L6Q3U9 | 2e-72 | A0A3L6Q3U9_PANMI; GATA transcription factor 28-like | ||||
STRING | Si027518m | 4e-61 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15880 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 1e-26 | ZIM-LIKE 2 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_20580A |