PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_20500A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

NF-YC

Protein Properties

Length: 200aa MW: 21565.5 Da PI: 4.0315

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_20500A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	41	4.1e-13	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+s+a elf+ +l r++ + ++ +tl+ ++++v+r fdfl+++v + Oropetium_20150105_20500A 1 MQADEDVGKIALAVPVLVSRALELFLQDLIDRTYEITLQSGAKTLNSFHLKQCVKRYSSFDFLTEVVSK 69 899**************************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	5.2E-12	1	54	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	9.22E-19	1	71	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	5.8E-18	1	68	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MQADEDVGKI ALAVPVLVSR ALELFLQDLI DRTYEITLQS GAKTLNSFHL KQCVKRYSSF 60 DFLTEVVSKV PDLGGADSCG DERGLPRRRK SNGSDPENDE SRSSKMDESS MYAEQGEPLP 120 GEDTVPETNE SIPQSTHPPV EAAPSAPAQA TSSKVEEANT DHQADWPMPD AIGNVGVGPS 180 GFGHLTVQVD EDEDYDNED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-15	1	54	21	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	89	PRRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_20500A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT062754	1e-109	BT062754.1 Zea mays full-length cDNA clone ZM_BFb0342F17 mRNA, complete cds.
GenBank	EU952420	1e-109	EU952420.1 Zea mays clone 1280037 repressor protein mRNA, complete cds.
GenBank	EU964689	1e-109	EU964689.1 Zea mays clone 280866 repressor protein mRNA, complete cds.
GenBank	JX428444	1e-109	JX428444.1 Zea mays subsp. mays clone pUT3038 CA5P8 CCAAT-HAP5 type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008677777.1	1e-120	uncharacterized protein LOC541965 isoform X1
TrEMBL	Q8W0W6	1e-118	Q8W0W6_MAIZE; CCAAT-HAP5-transcription factor 59
STRING	GRMZM2G091433_P01	1e-119	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2172	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	1e-40	nuclear factor Y, subunit C11

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_20500A