PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_20439A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 356aa    MW: 37657.1 Da    PI: 8.2909
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_20439AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.21e-16179229656
                                S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                +++keq   Lee F+++++++ + ++ LA++l+L  rqV vWFqNrRa+ k
  Oropetium_20150105_20439A 179 RLSKEQSAFLEESFKEHSTLNPKLKAVLARQLNLRPRQVEVWFQNRRARTK 229
                                5799*********************************************98 PP
2HD-ZIP_I/II121.93.3e-39178265492
                HD-ZIP_I/II   4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                                 rlskeq+++LEesF+e+++L+p+ K+ lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+een+rL+ke ++L
  Oropetium_20150105_20439A 178 XRLSKEQSAFLEESFKEHSTLNPKLKAVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCDTLREENRRLHKELADL 261
                                69********************************************************************************** PP

                HD-ZIP_I/II  88 reelk 92 
                                r +lk
  Oropetium_20150105_20439A 262 R-ALK 265
                                9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.937171231IPR001356Homeobox domain
SMARTSM003896.5E-13173235IPR001356Homeobox domain
SuperFamilySSF466893.42E-16177240IPR009057Homeodomain-like
PfamPF000462.7E-14179229IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-15179229IPR009057Homeodomain-like
CDDcd000863.24E-15179232No hitNo description
PROSITE patternPS000270206229IPR017970Homeobox, conserved site
PfamPF021831.2E-10231265IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.2E-23231274IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MELGLGLGKA AAVSEAGTAA PELGLGLGVG ASAGRRVERG SGSDDASPPA GRTWWAAAAA  60
SPEPVVRLSL VSSSLGLQWP LGSSSDRGRA EEAPPARGFD VNRTPSVSAA AAGAAGFEED  120
EDQAAATAAP ALSSSPNDDS GGSFPXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXRL  180
SKEQSAFLEE SFKEHSTLNP KLKAVLARQL NLRPRQVEVW FQNRRARTKL KQTEVDCEYL  240
KRCCDTLREE NRRLHKELAD LRALKTAQPF YMHVPATTLS MCPSCERVAS NPAAAVSTSV  300
PVASCASPAT PAITSAAGPP PPREHRPSSF AALFAATRSF PLQPRQPAPA ASNCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223231RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_20439A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2411961e-155AK241196.1 Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702116.11e-113homeobox-leucine zipper protein HOX27
SwissprotA2YW031e-103HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
SwissprotQ6YPD01e-103HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27
TrEMBLK3YL331e-111K3YL33_SETIT; Uncharacterized protein
STRINGSi014954m1e-112(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-61homeobox from Arabidopsis thaliana