PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_20431A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

C2H2

Protein Properties

Length: 498aa MW: 53115.6 Da PI: 9.0316

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_20431A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.1	1.8e-06	71	93	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cg+ F r nL+ H r+H Oropetium_20150105_20431A 71 YVCEICGQGFQRDQNLQMHRRRH 93 9*********************9 PP
2	zf-C2H2	11.6	0.00085	150	171	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C C+k + +s++k H++t+ Oropetium_20150105_20431A 150 ACARCSKAYAVHSDYKAHLKTC 171 6*******************98 PP
3	zf-C2H2	10.8	0.0015	179	197	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ Oropetium_20150105_20431A 179 DCGRVFSRVESFIEHQDTC 197 9***************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	2.8E-5	70	93	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.02E-5	70	93	No hit	No description
SMART	SM00355	0.0032	71	93	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.635	71	93	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	73	93	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	113	143	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.02E-5	144	169	No hit	No description
SMART	SM00355	230	149	176	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MLSSCLPPTS TTMPHPEAAA GGSPEPFRSL QIATASAAAG AKRKRRPAGT PDPDAEVVSL 60 SPRTLLESDR YVCEICGQGF QRDQNLQMHR RRHKVPWKLL KREAGEAARK RVFVCPEPSC 120 LHHDPAHALG DLVGIKKHFR RKHSGHRQWA CARCSKAYAV HSDYKAHLKT CGTRGHTCDC 180 GRVFSRVESF IEHQDTCNAS RPARAEASSS PASGSGGGGG LGAAAAAAVS SSQQSRQLHA 240 ALSRTASSAS PSSGDLVVSP PVAWPGPPPM ASSTANNVAA ALHRFEPAER RPSVHNLELQ 300 LMPPRGGGCA DGAALPAAAA AAYCVSPHSP SIAAPRRGGD PTMRLQLSIG VGGGATDDNS 360 RASSSSSAAT ARLKEEAREQ LXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 420 XXXXXXXXXR DHAVRQVDAA VLQVTCYSCR HKFRAAVKSS DVASYVSSVV TEGGDDDELQ 480 LNNADEPRHG RTMMDLN*

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MLSSCLPPTS TTMPHPEAAA GGSPEPFRSL QIATASAAAG AKRKRRPAGT PDPDAEVVSL  60
SPRTLLESDR YVCEICGQGF QRDQNLQMHR RRHKVPWKLL KREAGEAARK RVFVCPEPSC  120
LHHDPAHALG DLVGIKKHFR RKHSGHRQWA CARCSKAYAV HSDYKAHLKT CGTRGHTCDC  180
GRVFSRVESF IEHQDTCNAS RPARAEASSS PASGSGGGGG LGAAAAAAVS SSQQSRQLHA  240
ALSRTASSAS PSSGDLVVSP PVAWPGPPPM ASSTANNVAA ALHRFEPAER RPSVHNLELQ  300
LMPPRGGGCA DGAALPAAAA AAYCVSPHSP SIAAPRRGGD PTMRLQLSIG VGGGATDDNS  360
RASSSSSAAT ARLKEEAREQ LXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  420
XXXXXXXXXR DHAVRQVDAA VLQVTCYSCR HKFRAAVKSS DVASYVSSVV TEGGDDDELQ  480
LNNADEPRHG RTMMDLN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-17	145	209	3	67	Zinc finger protein JACKDAW
5b3h_F	4e-17	145	209	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_20431A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK106796	0.0	AK106796.1 Oryza sativa Japonica Group cDNA clone:002-116-B04, full insert sequence.
GenBank	AK119595	0.0	AK119595.1 Oryza sativa Japonica Group cDNA clone:002-117-D09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004973649.1	0.0	protein indeterminate-domain 16
TrEMBL	A0A368RMM6	0.0	A0A368RMM6_SETIT; Uncharacterized protein
STRING	Pavir.Fb01741.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1051	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	4e-96	indeterminate(ID)-domain 14

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_20431A