PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_20425A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

GeBP

Protein Properties

Length: 107aa MW: 12422.7 Da PI: 5.3413

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_20425A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	32.6	2.2e-10	1	41	58	98
DUF573 58 irrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 irrLK+K+k +ak+g+ep++ +eh+++++elskk+Wgs Oropetium_20150105_20425A 1 IRRLKHKYKLLAIRAKKGREPDLPTEHERDVYELSKKVWGS 41 8**************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.6E-9	1	40	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
IRRLKHKYKL LAIRAKKGRE PDLPTEHERD VYELSKKVWG SISIDGFNEV GGSRTYENAG 60 DEESNEEQEI EESDEGMESG WDVRDRSNKK LKAFRLENGN RNAIAWN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_20425A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012700838.1	1e-32	STOREKEEPER protein
Refseq	XP_012702606.1	1e-32	STOREKEEPER protein
Refseq	XP_025821022.1	1e-32	serine/arginine repetitive matrix protein 1-like
TrEMBL	A0A0A9BR30	1e-44	A0A0A9BR30_ARUDO; Uncharacterized protein
STRING	Si019873m	2e-32	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2671	35	87

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_20425A