PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_20362A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 271aa    MW: 29240.5 Da    PI: 4.4885
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_20362AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.71.1e-1947100356
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                k+++++keq+++Le+ Fe ++++  e++e+LA+ lgL+ rqV vWFqNrRa++k
  Oropetium_20150105_20362A  47 KKRRLSKEQVRALERSFETENKLEPERKERLARDLGLQPRQVAVWFQNRRARWK 100
                                45689************************************************9 PP

2HD-ZIP_I/II128.62.6e-4146138193
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                ekkrrlskeqv++LE+sFe+e+kLeperK++lar+LglqprqvavWFqnrRAR+ktk+lE+dy aL ++ydal++++++L++++
  Oropetium_20150105_20362A  46 EKKRRLSKEQVRALERSFETENKLEPERKERLARDLGLQPRQVAVWFQNRRARWKTKRLERDYVALCHSYDALRADHDALRRDK 129
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLreelke 93 
                                ++L  e+ke
  Oropetium_20150105_20362A 130 DALLVEIKE 138
                                ***999986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-2039103IPR009057Homeodomain-like
PROSITE profilePS5007117.70242102IPR001356Homeobox domain
SMARTSM003891.1E-1845106IPR001356Homeobox domain
CDDcd000861.02E-1947103No hitNo description
PfamPF000465.6E-1747100IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-2048108IPR009057Homeodomain-like
PRINTSPR000311.3E-57382IPR000047Helix-turn-helix motif
PROSITE patternPS00027077100IPR017970Homeobox, conserved site
PRINTSPR000311.3E-58298IPR000047Helix-turn-helix motif
PfamPF021833.3E-14102143IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MKRPSGSRSG GLLSMVQSDD GFVGVAVEDE TADEDVVVMP GGCGGEKKRR LSKEQVRALE  60
RSFETENKLE PERKERLARD LGLQPRQVAV WFQNRRARWK TKRLERDYVA LCHSYDALRA  120
DHDALRRDKD ALLVEIKELK GKLGDEDAVA SFSSVKEEPV ASDLEPPAAA TAAQGSSESD  180
SSGVVNDAET GGPEKAAPTA APTVAEAEAV VPGTAALRGE VFFHAQLLKV EDEEAAFLGD  240
DDAACGGFFA DLQPPPSLPW WTEPVEHWAA *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_20362A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822160.11e-119homeobox-leucine zipper protein HOX20-like
SwissprotA2YWC01e-108HOX20_ORYSI; Homeobox-leucine zipper protein HOX20
SwissprotQ6Z2481e-108HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20
TrEMBLA0A2S3I3D91e-117A0A2S3I3D9_9POAL; Uncharacterized protein
TrEMBLA0A2T7D8P01e-117A0A2T7D8P0_9POAL; Uncharacterized protein
STRINGOBART08G18330.11e-111(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-43homeobox protein 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]