PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_20362A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 271aa MW: 29240.5 Da PI: 4.4885 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.7 | 1.1e-19 | 47 | 100 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++keq+++Le+ Fe ++++ e++e+LA+ lgL+ rqV vWFqNrRa++k Oropetium_20150105_20362A 47 KKRRLSKEQVRALERSFETENKLEPERKERLARDLGLQPRQVAVWFQNRRARWK 100 45689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.6 | 2.6e-41 | 46 | 138 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 ekkrrlskeqv++LE+sFe+e+kLeperK++lar+LglqprqvavWFqnrRAR+ktk+lE+dy aL ++ydal++++++L++++ Oropetium_20150105_20362A 46 EKKRRLSKEQVRALERSFETENKLEPERKERLARDLGLQPRQVAVWFQNRRARWKTKRLERDYVALCHSYDALRADHDALRRDK 129 69********************************************************************************** PP HD-ZIP_I/II 85 eeLreelke 93 ++L e+ke Oropetium_20150105_20362A 130 DALLVEIKE 138 ***999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.98E-20 | 39 | 103 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.702 | 42 | 102 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-18 | 45 | 106 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.02E-19 | 47 | 103 | No hit | No description |
Pfam | PF00046 | 5.6E-17 | 47 | 100 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-20 | 48 | 108 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.3E-5 | 73 | 82 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 77 | 100 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.3E-5 | 82 | 98 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.3E-14 | 102 | 143 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MKRPSGSRSG GLLSMVQSDD GFVGVAVEDE TADEDVVVMP GGCGGEKKRR LSKEQVRALE 60 RSFETENKLE PERKERLARD LGLQPRQVAV WFQNRRARWK TKRLERDYVA LCHSYDALRA 120 DHDALRRDKD ALLVEIKELK GKLGDEDAVA SFSSVKEEPV ASDLEPPAAA TAAQGSSESD 180 SSGVVNDAET GGPEKAAPTA APTVAEAEAV VPGTAALRGE VFFHAQLLKV EDEEAAFLGD 240 DDAACGGFFA DLQPPPSLPW WTEPVEHWAA * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_20362A |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822160.1 | 1e-119 | homeobox-leucine zipper protein HOX20-like | ||||
Swissprot | A2YWC0 | 1e-108 | HOX20_ORYSI; Homeobox-leucine zipper protein HOX20 | ||||
Swissprot | Q6Z248 | 1e-108 | HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20 | ||||
TrEMBL | A0A2S3I3D9 | 1e-117 | A0A2S3I3D9_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7D8P0 | 1e-117 | A0A2T7D8P0_9POAL; Uncharacterized protein | ||||
STRING | OBART08G18330.1 | 1e-111 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3009 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 1e-43 | homeobox protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_20362A |
Publications ? help Back to Top | |||
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