PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_20352A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family Trihelix
Protein Properties Length: 313aa    MW: 34952.9 Da    PI: 10.3743
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_20352AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.11.3e-1924110286
                   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkrtsesss 77 
                                W++ e+++Li+a+++++++lrrg+lk+++Weev++ +         +   +++ +qC++k+e+l+kry+ + ++         s
  Oropetium_20150105_20352A  24 WSHVETMHLIDAYEDRWTALRRGQLKAHQWEEVAAEVaarcaatpGAAVQRKTGTQCRHKLEKLRKRYRTEGARPVT------S 101
                                *************************************999999855555566*****************98877764......6 PP

                   trihelix  78 tcpyfdqle 86 
                                 +pyf+++e
  Oropetium_20150105_20352A 102 LWPYFRRME 110
                                8*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-1922112No hitNo description
SMARTSM005957.2E-631117IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MMAQEADESP RGPAAKKSAP AQPWSHVETM HLIDAYEDRW TALRRGQLKA HQWEEVAAEV  60
AARCAATPGA AVQRKTGTQC RHKLEKLRKR YRTEGARPVT SLWPYFRRME RLERGPGHVS  120
AYPPVADSSP TAASDEEXXX XXXXXXXXXQ ELVPRNNNTR SINGIIREFG SGLAPRHPQL  180
QQLTPSITPS TAPPRKRVSY EAFQAAAAAA AATEAGKAKE GEVEMVRRPF GSGGTNAELS  240
XXXXXXXXXX MRLERRRMEV QWEIEQGWKQ TEARQTRMLQ DAQRQLRDTI AATCAVPPKK  300
ARRDHGNNGD GF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_20352A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820374.11e-134uncharacterized protein LOC112896572
TrEMBLA0A0A9FZH61e-140A0A0A9FZH6_ARUDO; Uncharacterized protein
STRINGPavir.J15698.1.p1e-126(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100782933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.16e-20Trihelix family protein