PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_20263A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 416aa    MW: 45112.5 Da    PI: 6.7658
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_20263AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-05242261120
                                EEETTTTEEESSHHHHHHHH CS
                    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                                ++Cp C k+F+r  n++ H+
  Oropetium_20150105_20263A 242 FSCPVCYKTFNRYNNMQMHM 261
                                89*****************9 PP
2zf-C2H212.50.00043328348323
                                ETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                                C +Cgk F  k + ++H +++
  Oropetium_20150105_20263A 328 CRKCGKAFAVKGDWRTHEKNC 348
                                *****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.81E-5238264No hitNo description
SMARTSM003550.45242264IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.5E-6242261IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.743242269IPR007087Zinc finger, C2H2
PROSITE patternPS000280244264IPR007087Zinc finger, C2H2
SuperFamilySSF576673.58E-6310346No hitNo description
Gene3DG3DSA:3.30.160.603.4E-5313346IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035582326346IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.621326346IPR007087Zinc finger, C2H2
SMARTSM00355220352375IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MEDPYYTSFF KNHPYYYYTS STLPAAPAAH HLSPSFPPYA ATLYPAAAPH YPAFFQPPLP  60
PATLPPLDDS SPPSPPLKEA LPLLSLSPTR CAASARQRNV EAVDYDSDDD AAEEFLREAA  120
VGRSGSRAPL FADLNCIPTC CDDEGDPMDV EADAVALHIG LPAAAPGNGT EADLLSALSS  180
SRAGAGXXXX XXXXXXXXXT GAGDGEDEVV PLGFATTPIG RLNKGQYWIP TPAQILIGPT  240
QFSCPVCYKT FNRYNNMQMH MWGHGSQYRK GPESLRGVQP TAMLRLPCYC CAPGCRNNID  300
HPRARPLKDF RTLQTHYKRK HGLKPFLCRK CGKAFAVKGD WRTHEKNCGK LWYCLCGSEF  360
KHKRSLKDHA RAFGHGHGAF GCNADGADGL EDDDEGAVSE IEQDCAGAGS CRSAR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_20263A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0969070.0FP096907.1 Phyllostachys edulis cDNA clone: bphylf041f10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821697.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-119ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2T7D9610.0A0A2T7D961_9POAL; Uncharacterized protein
STRINGPavir.Fa00506.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-110C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]