PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_20218A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 150aa MW: 16832.9 Da PI: 6.9496 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.4 | 1.2e-18 | 97 | 149 | 2 | 54 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ ++tkeq Lee F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ Oropetium_20150105_20218A 97 RKKLRLTKEQSAMLEERFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRAR 149 78889**********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 80.7 | 2.3e-26 | 97 | 149 | 1 | 53 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR 53 +kk+rl+keq+++LEe F+e+++L+p++K++la++L+l+prqv+vWFqnrRAR Oropetium_20150105_20218A 97 RKKLRLTKEQSAMLEERFKEHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRAR 149 69**************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.34E-18 | 83 | 149 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.8E-18 | 87 | 149 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.329 | 93 | 149 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.2E-9 | 95 | 149 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.9E-16 | 97 | 149 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.91E-15 | 97 | 149 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MEQEEVGLAL GLSLGSGHHH QLKEEEVQPS PPSRRLEPSL CLSLPADDGT LQKQSLQARP 60 AVKRELPVED DEGATDRALY SVASWAADED EGCNNSRKKL RLTKEQSAML EERFKEHSTL 120 NPKQKAALAK QLNLRPRQVE VWFQNRRAR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 101 | SRKKLRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_20218A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004983488.1 | 2e-64 | homeobox-leucine zipper protein HOX15 | ||||
Swissprot | A2Z4C4 | 1e-37 | HOX15_ORYSI; Homeobox-leucine zipper protein HOX15 | ||||
Swissprot | Q7G737 | 1e-37 | HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15 | ||||
TrEMBL | K4AE82 | 3e-63 | K4AE82_SETIT; Uncharacterized protein | ||||
STRING | Si037189m | 6e-64 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2055 | 36 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60390.1 | 2e-29 | homeobox-leucine zipper protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_20218A |
Publications ? help Back to Top | |||
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