PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_20180A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 278aa    MW: 29710.9 Da    PI: 6.1789
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_20180AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.8e-31112170259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+++Hnh+
  Oropetium_20150105_20180A 112 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPSMLVITYSSDHNHP 170
                                699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.351106172IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.0E-31108172IPR003657WRKY domain
SuperFamilySSF1182904.97E-26109172IPR003657WRKY domain
SMARTSM007742.4E-36111171IPR003657WRKY domain
PfamPF031067.2E-26113170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEEGVIRHVM SSSGAPPPPL PQLLAAGASG GGVVAEGECD VAAAPPEVVD EHEHGLDVAM  60
VDALPHRAHD APTINRRKSQ TKKVVVCIPA PTAAPPGVGG RLSTSGGEVV PSDLWAWRKY  120
GQKPIKGSPY PRGYYRCSSS KGCSARKQVE RSRTDPSMLV ITYSSDHNHP WPTQRNALAG  180
STRQPTAAGK SHHHQHDAAA ADHDYDLEMF EEMDGALNIN FNPQKQGQQN ATAADDDDHS  240
LERDDKQQLL DPFTFSFFDW VGASFGIGDA NKGGGYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-221131731880Disease resistance protein RRS1
5w3x_D1e-221131731880Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_20180A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0187271e-76AC018727.10 Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence.
GenBankAP0149661e-76AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126181e-76CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBankKC9546101e-76KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658838.18e-80probable WRKY transcription factor 35
TrEMBLA0A1D6KA862e-78A0A1D6KA86_MAIZE; Putative WRKY transcription factor 14
TrEMBLA0A317YCF92e-78A0A317YCF9_MAIZE; Putative WRKY transcription factor 35
STRINGPavir.Ib03051.1.p1e-83(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118473039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.14e-53WRKY DNA-binding protein 35