PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_20065A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family Trihelix
Protein Properties Length: 314aa    MW: 33388.7 Da    PI: 10.1821
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_20065AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix70.14.2e-2256145186
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessst 78 
                                +Wt++e+laLi+a+r+++e+lr+g+l++++W++v++++        +   ++ +qC++k+e+l+kry+++++++ +r+++   +
  Oropetium_20150105_20065A  56 CWTQEETLALIKAYRDRWESLRKGNLRAADWDDVADAVtarcgrFPTSTPKTGVQCRHKIEKLRKRYRAERARSAGRSKG--PK 137
                                8*************************************9988877788899************************98443..47 PP

                   trihelix  79 cpyfdqle 86 
                                +p++  l+
  Oropetium_20150105_20065A 138 WPFYPLLH 145
                                ****9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.5E-2255146No hitNo description
PROSITE profilePS500906.13357119IPR017877Myb-like domain
SMARTSM005958.5E-664152IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSSSSSDLAR DDAVSSPDLP PLAAPVAAAA AAAAAAASSG GGGLGGGSGR RLPPPCWTQE  60
ETLALIKAYR DRWESLRKGN LRAADWDDVA DAVTARCGRF PTSTPKTGVQ CRHKIEKLRK  120
RYRAERARSA GRSKGPKWPF YPLLHDLAGN GAPDPSPNAI VKIKTKGPAP PASPPSPVSS  180
PSSEEDAARS RSLHGLISNG GAGSGLRFTI PKASRTRPAA VAATRPEKSS NEDDAESEAM  240
SEVAAALRAV GEGFMRMEER RLELSLQMEK ERMESEMKRT QAMLDAQQLF LEAFLGKQQL  300
PHKRARLSPA MED*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_20065A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659928.11e-161trihelix transcription factor ASIL1
TrEMBLA0A1E5V2R81e-161A0A1E5V2R8_9POAL; Uncharacterized protein
STRINGGRMZM2G428470_P011e-161(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56893250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-16Trihelix family protein