PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_20035A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 295aa    MW: 31313.2 Da    PI: 9.1442
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_20035AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox37.73.5e-121711992856
                                HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox  28 eereeLAkklgLterqVkvWFqNrRakek 56 
                                ++++ LAk+l+L+ rqV vWFqNrRa+ k
  Oropetium_20150105_20035A 171 KQKAALAKQLNLKPRQVEVWFQNRRARTK 199
                                7899***********************98 PP

2HD-ZIP_I/II92.83.8e-301702342691
                HD-ZIP_I/II  26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                                +++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++ev+eLr +l
  Oropetium_20150105_20035A 170 QKQKAALAKQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENRRLQREVAELR-AL 234
                                689***********************************************************9.55 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.1E-2522121IPR006712HD-ZIP protein, N-terminal
SMARTSM003890.0028157205IPR001356Homeobox domain
PROSITE profilePS5007112.341169201IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.2E-11170204IPR009057Homeodomain-like
CDDcd000861.76E-9170202No hitNo description
SuperFamilySSF466893.09E-10171209IPR009057Homeodomain-like
PfamPF000461.5E-9171199IPR001356Homeobox domain
PROSITE patternPS000270176199IPR017970Homeobox, conserved site
CDDcd146860.0043194233No hitNo description
SMARTSM003402.1E-23201244IPR003106Leucine zipper, homeobox-associated
PfamPF021835.9E-11201235IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MEMMVNARGD EQYGGGHHHN LGLGLSLSLG IATAAAAPVG PSSSPTPPQQ QQQKRALSVA  60
PQQHTAAACH GHEMPFLRGI DVNRAPLGET RRGISCSEDE EPGASSPNST LSSLSGKRGA  120
PTRSGGGGGE GDLTPRAGGG SDDEDSGAAG GGEKGEEKKT DPKKIFFSAQ KQKAALAKQL  180
NLKPRQVEVW FQNRRARTKL KQTEVDCEFL KRCCESLTEE NRRLQREVAE LRALKLVAPH  240
HYARMPPPTT LTMCPSCERV AADEPGRAVR PAPAGPWGPV PVRPVFVDGP ARRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193201RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:10934011, ECO:0000269|PubMed:9076993}.
UniProtProbable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:9076993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_20035A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269|PubMed:10732669}.
UniProtINDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269|PubMed:10934011}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9424521e-127EU942452.1 Zea mays clone 1503625 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795353.11e-127homeobox-leucine zipper protein HOX1-like
SwissprotQ406913e-65HOX1_ORYSI; Homeobox-leucine zipper protein HOX1
SwissprotQ7XC543e-65HOX1_ORYSJ; Homeobox-leucine zipper protein HOX1
TrEMBLA0A2S3IP411e-126A0A2S3IP41_9POAL; Uncharacterized protein
STRINGPavir.Ia02217.1.p1e-130(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25873889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44910.15e-41homeobox-leucine zipper protein 4
Publications ? help Back to Top
  1. Scarpella E,Boot KJ,Rueb S,Meijer AH
    The procambium specification gene Oshox1 promotes polar auxin transport capacity and reduces its sensitivity toward inhibition.
    Plant Physiol., 2002. 130(3): p. 1349-60
    [PMID:12428000]
  2. Scarpella E,Rueb S,Meijer AH
    The RADICLELESS1 gene is required for vascular pattern formation in rice.
    Development, 2003. 130(4): p. 645-58
    [PMID:12505996]
  3. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  4. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  5. Scarpella E,Simons EJ,Meijer AH
    Multiple regulatory elements contribute to the vascular-specific expression of the rice HD-Zip gene Oshox1 in Arabidopsis.
    Plant Cell Physiol., 2005. 46(8): p. 1400-10
    [PMID:15964905]
  6. Meijer AH,Ouwerkerk PB,Hoge JH
    Vectors for transcription factor cloning and target site identification by means of genetic selection in yeast.
    Yeast, 1998. 14(15): p. 1407-15
    [PMID:9848232]