PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_20035A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 295aa MW: 31313.2 Da PI: 9.1442 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 37.7 | 3.5e-12 | 171 | 199 | 28 | 56 |
HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 28 eereeLAkklgLterqVkvWFqNrRakek 56 ++++ LAk+l+L+ rqV vWFqNrRa+ k Oropetium_20150105_20035A 171 KQKAALAKQLNLKPRQVEVWFQNRRARTK 199 7899***********************98 PP | |||||||
2 | HD-ZIP_I/II | 92.8 | 3.8e-30 | 170 | 234 | 26 | 91 |
HD-ZIP_I/II 26 perKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++ev+eLr +l Oropetium_20150105_20035A 170 QKQKAALAKQLNLKPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTEENRRLQREVAELR-AL 234 689***********************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04618 | 1.1E-25 | 22 | 121 | IPR006712 | HD-ZIP protein, N-terminal |
SMART | SM00389 | 0.0028 | 157 | 205 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 12.341 | 169 | 201 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-11 | 170 | 204 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.76E-9 | 170 | 202 | No hit | No description |
SuperFamily | SSF46689 | 3.09E-10 | 171 | 209 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.5E-9 | 171 | 199 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 176 | 199 | IPR017970 | Homeobox, conserved site |
CDD | cd14686 | 0.0043 | 194 | 233 | No hit | No description |
SMART | SM00340 | 2.1E-23 | 201 | 244 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 5.9E-11 | 201 | 235 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MEMMVNARGD EQYGGGHHHN LGLGLSLSLG IATAAAAPVG PSSSPTPPQQ QQQKRALSVA 60 PQQHTAAACH GHEMPFLRGI DVNRAPLGET RRGISCSEDE EPGASSPNST LSSLSGKRGA 120 PTRSGGGGGE GDLTPRAGGG SDDEDSGAAG GGEKGEEKKT DPKKIFFSAQ KQKAALAKQL 180 NLKPRQVEVW FQNRRARTKL KQTEVDCEFL KRCCESLTEE NRRLQREVAE LRALKLVAPH 240 HYARMPPPTT LTMCPSCERV AADEPGRAVR PAPAGPWGPV PVRPVFVDGP ARRS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 193 | 201 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:10934011, ECO:0000269|PubMed:9076993}. | |||||
UniProt | Probable transcription repressor involved leaf development. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. May act as a regulatory switch to specify provascular cell fate. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:9076993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_20035A |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | INDUCTION: By auxin and sucrose in primary root apical region. By wounding in leaves. {ECO:0000269|PubMed:10934011}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU942452 | 1e-127 | EU942452.1 Zea mays clone 1503625 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795353.1 | 1e-127 | homeobox-leucine zipper protein HOX1-like | ||||
Swissprot | Q40691 | 3e-65 | HOX1_ORYSI; Homeobox-leucine zipper protein HOX1 | ||||
Swissprot | Q7XC54 | 3e-65 | HOX1_ORYSJ; Homeobox-leucine zipper protein HOX1 | ||||
TrEMBL | A0A2S3IP41 | 1e-126 | A0A2S3IP41_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia02217.1.p | 1e-130 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2587 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44910.1 | 5e-41 | homeobox-leucine zipper protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_20035A |