PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_19862A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB | ||||||||
Protein Properties | Length: 272aa MW: 29599.6 Da PI: 4.5074 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24 | 8.9e-08 | 14 | 35 | 1 | 22 |
TSSS-HHHHHHHHHHHHHTTTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg 22 rg+W+ eEd++lv +++q+G + Oropetium_20150105_19862A 14 RGAWSSEEDQRLVAYIRQHGHP 35 89******************88 PP | |||||||
2 | Myb_DNA-binding | 48.4 | 2.2e-15 | 70 | 111 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +T++E++l+v+++++lG++ W++Ia+ ++ gRt++++k+ w+++ Oropetium_20150105_19862A 70 FTADEEDLIVRLHQELGNR-WSAIAAQLP-GRTDNEIKNVWHTH 111 9******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-7 | 5 | 36 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.561 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-11 | 66 | 114 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.31E-13 | 69 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.58E-10 | 70 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-21 | 70 | 113 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.7E-14 | 70 | 111 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MGRAPCCAKE GLRRGAWSSE EDQRLVAYIR QHGHPNXXXX XXXXXXXXXX XXXXXXXXXX 60 XXXXXXXXXF TADEEDLIVR LHQELGNRWS AIAAQLPGRT DNEIKNVWHT HIKKRLKDAD 120 SAGRTKQARK SSKPAKTSEK AEDDAGVDHG DELSPFAVAS PGLSSSVSSG VTCSTATEST 180 AAAVSSADNA ATTSASPLAA VKVEETESFS TAEFPPIDES FWTSAEVMDM DLGAMDEELG 240 LASSASTRDE DMEFWLKMLL ESGDMRDLSV L* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_19862A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679408 | 1e-125 | HF679408.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB2 protein. | |||
GenBank | JQ255478 | 1e-125 | JQ255478.1 Saccharum hybrid cultivar Co 86032 MYB46 (MYB46) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982863.1 | 1e-101 | transcription factor MYB4 | ||||
TrEMBL | A0A0A9PE01 | 1e-102 | A0A0A9PE01_ARUDO; Uncharacterized protein | ||||
STRING | Si040527m | 1e-101 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23250.1 | 2e-40 | myb domain protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_19862A |