PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19850A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ARF
Protein Properties Length: 648aa    MW: 70336.1 Da    PI: 7.8378
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19850AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.4e-24100201199
                                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                                f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L +g
  Oropetium_20150105_19850A 100 FAKTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAG 181
                                89****************************996555555..8999*************************************** PP

                                -EEEEEE-SSSEE..EEEEE-S CS
                         B3  78 DfvvFkldgrsefelvvkvfrk 99 
                                D++vF   +++ +el+v+++r+
  Oropetium_20150105_19850A 182 DSIVFL--RTEHGELCVGIRRA 201
                                ******..55999*******97 PP
2Auxin_resp90.33.4e-30256324168
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsd 68 
                                aa+ a+++++FevvY+Prast+eFvvk+++v++a+++++++GmRfkmafetedss++++ +Gt+++v+ 
  Oropetium_20150105_19850A 256 AARLAASGQPFEVVYYPRASTPEFVVKAASVQNAMRIHWCPGMRFKMAFETEDSSRISWfMGTIASVQV 324
                                68899*************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-3691203IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-2996205IPR015300DNA-binding pseudobarrel domain
CDDcd100173.35E-2199200No hitNo description
PfamPF023624.5E-22100201IPR003340B3 DNA binding domain
PROSITE profilePS5086312.929100202IPR003340B3 DNA binding domain
SMARTSM010198.5E-22100202IPR003340B3 DNA binding domain
PfamPF065075.5E-25256324IPR010525Auxin response factor
PROSITE profilePS5174521.235554632IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MVQMPPVRSR VYYFPQGHAE HAQGGGGAAD LAATLGPRAL PALVLCCVAG VRFLADPETD  60
EVFAKIRLVP VAPSDVVGFR EPDDLGGGDP ADARDKLSSF AKTLTQSDAN NGGGFSVPRY  120
CAETIFPKLD YRADPPVQTV LAKDVHGEVW KFRHIYRGTP RRHLLTTGWS TFVNQKKLVA  180
GDSIVFLRTE HGELCVGIRR AKRVSYGGME CMSGWNAPGY GGFSAFLKEE ENKLMKGPGG  240
YMRGRGKVKI ADVVDAARLA ASGQPFEVVY YPRASTPEFV VKAASVQNAM RIHWCPGMRF  300
KMAFETEDSS RISWFMGTIA SVQVTWDEPD LLQNVKCVNP WLVELASSIP PIHLGPFSPP  360
RKKLRVPQHP DFPFDGQLLN PIFHGNPLGP SNSPLCCFPD NAPAGIQGAR HAQFGLSVTD  420
HQLNKLRLGL FQGGGFNRLD TITPSSRISK GFVITSSPAH ESVSCLLTIG SPQGTEKPDD  480
RKKSHIMLFG KPILTEQQLN SRGSSKTFSP EATGNSSSNG SAPKAANASD VSGSSICIGF  540
SSQGHEASEL GLEAGRCKVF MESEDVGRTI DLSVFGSYEE LYRQLADMFG IEKEEIISHL  600
CYRDAAGAVK HTGEEPFSDF MKAARRLTIV EGSEGRLQKP LLQCMVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-59134863392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19850A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982839.10.0auxin response factor 22
SwissprotQ9AV470.0ARFV_ORYSJ; Auxin response factor 22
TrEMBLK4A6M00.0K4A6M0_SETIT; Auxin response factor
STRINGSi034525m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]