PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19848A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 835aa    MW: 91731.4 Da    PI: 5.2993
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19848AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-182986457
                               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                 ++t+eq+e+Le++++++++p+ ++r++L +++    +++ +q+kvWFqNrR ++k+
  Oropetium_20150105_19848A 29 YVRYTPEQVEALERVYAECPKPTSARRQQLLRECpilsNIEPKQIKVWFQNRRCRDKQ 86
                               6789***************************************************996 PP

2START1593.8e-501683752204
                                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEE CS
                      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevi 85 
                                +aee+++e+v+ka+ ++  Wv+++ +++g+++  +++ s++++g a+ra+g+v  +++   +e+l+d++ W +++++ e+   +
  Oropetium_20150105_19848A 168 IAEETLTEFVSKATGTAIEWVQMPGMKPGPDSFGIVSVSHGCRGVAARACGLVNLEPT-KIMEILKDRPSWFRDCRSLEVFTML 250
                                789*******************************************************.5555555555*************** PP

                                CTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEE CS
                      START  86 ssg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghsk 163
                                  g  g+++l +++++a+++lvp Rdf+++Ry+ ++++g++v++++S++     ++    +++vRae+lpSg+l++p+++g+s 
  Oropetium_20150105_19848A 251 PAGngGTIELVYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGQStasAQQFVRAEMLPSGYLVRPCEEGGSI 334
                                *9999********************************************9877777677899********************** PP

                                EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                      START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                                v++v+h dl++++++++lr+l++s+ + ++k++ a+l++ +
  Oropetium_20150105_19848A 335 VHIVDHLDLEAWSVPEVLRPLYESSSVVAQKMTSAALRHIR 375
                                ***********************************999765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-19986IPR009057Homeodomain-like
PROSITE profilePS5007115.5642387IPR001356Homeobox domain
SMARTSM003891.2E-162591IPR001356Homeobox domain
CDDcd000866.72E-172888No hitNo description
SuperFamilySSF466891.97E-162889IPR009057Homeodomain-like
PfamPF000464.0E-162986IPR001356Homeobox domain
CDDcd146861.07E-580119No hitNo description
PROSITE profilePS5084827.887158386IPR002913START domain
CDDcd088751.79E-71162378No hitNo description
SuperFamilySSF559611.15E-35167379No hitNo description
SMARTSM002345.7E-37167377IPR002913START domain
Gene3DG3DSA:3.30.530.201.6E-21167371IPR023393START-like domain
PfamPF018526.0E-48168375IPR002913START domain
PfamPF086701.1E-48691833IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MAAAVAMRSG SSDGGDGGYD KGGMDTGKYV RYTPEQVEAL ERVYAECPKP TSARRQQLLR  60
ECPILSNIEP KQIKVWFQNR RCRDKQRKES SRLQAVNRKL SAMNKLLMEE NERLQKQVSQ  120
LVNENAYMKQ QLQSVQNPSL ANDTSCESNA TAPANLRDAN NPSGLLSIAE ETLTEFVSKA  180
TGTAIEWVQM PGMKPGPDSF GIVSVSHGCR GVAARACGLV NLEPTKIMEI LKDRPSWFRD  240
CRSLEVFTML PAGNGGTIEL VYMQMYAPTT LVPARDFWTL RYTTTMEDGS LVVCERSLSG  300
SGGGQSTASA QQFVRAEMLP SGYLVRPCEE GGSIVHIVDH LDLEAWSVPE VLRPLYESSS  360
VVAQKMTSAA LRHIRQIAQE TSGEVVYALG RQPAVLRTFS QRLSRGFNDA ISGFNDDGWS  420
VLCGEGIEDI IIACNTKMIR NNHNPANAFG APGGIICAKA SMLLEGVSPA ELIRFLRLHR  480
SQWADYNFDA YSASALKASP ASLPGLRPMG FSGNQIILPL ANTVENEEVL EIVRLEGQAL  540
AHDEGLLSRD IHLLQLCAGT DEKSMGSCFQ LVFTPIDELF PDDAPLIASG FRDGVPSGRT  600
LDLASSLEVG STTQQTSADA SQDERNLRSV LTIAFQFPYE LHLQDSVATM ARQYVRSIVS  660
AVQRVSISLS PSRSGLNTGQ KIISGFPEAA TLVRWICQSY QYHLGLEIVP HSDEAGESLL  720
RMFWDHQDAI LCCSFKEKPV FTFGNQMGID MLETALIALQ DLSLDKIFDE PGRKTLYAEF  780
PKLMEQGYVY LPAGVCLSGM GRHVSYEQAV VWKVLGEDSN VHCLAFCFVN WSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19848A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021306737.10.0homeobox-leucine zipper protein HOX9 isoform X2
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLA0A2T7C5J00.0A0A2T7C5J0_9POAL; Uncharacterized protein
STRINGSb01g019120.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein