PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_19848A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 835aa MW: 91731.4 Da PI: 5.2993 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.2 | 1.4e-18 | 29 | 86 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le++++++++p+ ++r++L +++ +++ +q+kvWFqNrR ++k+ Oropetium_20150105_19848A 29 YVRYTPEQVEALERVYAECPKPTSARRQQLLRECpilsNIEPKQIKVWFQNRRCRDKQ 86 6789***************************************************996 PP | |||||||
2 | START | 159 | 3.8e-50 | 168 | 375 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevi 85 +aee+++e+v+ka+ ++ Wv+++ +++g+++ +++ s++++g a+ra+g+v +++ +e+l+d++ W +++++ e+ + Oropetium_20150105_19848A 168 IAEETLTEFVSKATGTAIEWVQMPGMKPGPDSFGIVSVSHGCRGVAARACGLVNLEPT-KIMEILKDRPSWFRDCRSLEVFTML 250 789*******************************************************.5555555555*************** PP CTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEE CS START 86 ssg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghsk 163 g g+++l +++++a+++lvp Rdf+++Ry+ ++++g++v++++S++ ++ +++vRae+lpSg+l++p+++g+s Oropetium_20150105_19848A 251 PAGngGTIELVYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGQStasAQQFVRAEMLPSGYLVRPCEEGGSI 334 *9999********************************************9877777677899********************** PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204 v++v+h dl++++++++lr+l++s+ + ++k++ a+l++ + Oropetium_20150105_19848A 335 VHIVDHLDLEAWSVPEVLRPLYESSSVVAQKMTSAALRHIR 375 ***********************************999765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-19 | 9 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.564 | 23 | 87 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-16 | 25 | 91 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.72E-17 | 28 | 88 | No hit | No description |
SuperFamily | SSF46689 | 1.97E-16 | 28 | 89 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.0E-16 | 29 | 86 | IPR001356 | Homeobox domain |
CDD | cd14686 | 1.07E-5 | 80 | 119 | No hit | No description |
PROSITE profile | PS50848 | 27.887 | 158 | 386 | IPR002913 | START domain |
CDD | cd08875 | 1.79E-71 | 162 | 378 | No hit | No description |
SuperFamily | SSF55961 | 1.15E-35 | 167 | 379 | No hit | No description |
SMART | SM00234 | 5.7E-37 | 167 | 377 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.6E-21 | 167 | 371 | IPR023393 | START-like domain |
Pfam | PF01852 | 6.0E-48 | 168 | 375 | IPR002913 | START domain |
Pfam | PF08670 | 1.1E-48 | 691 | 833 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 835 aa Download sequence Send to blast |
MAAAVAMRSG SSDGGDGGYD KGGMDTGKYV RYTPEQVEAL ERVYAECPKP TSARRQQLLR 60 ECPILSNIEP KQIKVWFQNR RCRDKQRKES SRLQAVNRKL SAMNKLLMEE NERLQKQVSQ 120 LVNENAYMKQ QLQSVQNPSL ANDTSCESNA TAPANLRDAN NPSGLLSIAE ETLTEFVSKA 180 TGTAIEWVQM PGMKPGPDSF GIVSVSHGCR GVAARACGLV NLEPTKIMEI LKDRPSWFRD 240 CRSLEVFTML PAGNGGTIEL VYMQMYAPTT LVPARDFWTL RYTTTMEDGS LVVCERSLSG 300 SGGGQSTASA QQFVRAEMLP SGYLVRPCEE GGSIVHIVDH LDLEAWSVPE VLRPLYESSS 360 VVAQKMTSAA LRHIRQIAQE TSGEVVYALG RQPAVLRTFS QRLSRGFNDA ISGFNDDGWS 420 VLCGEGIEDI IIACNTKMIR NNHNPANAFG APGGIICAKA SMLLEGVSPA ELIRFLRLHR 480 SQWADYNFDA YSASALKASP ASLPGLRPMG FSGNQIILPL ANTVENEEVL EIVRLEGQAL 540 AHDEGLLSRD IHLLQLCAGT DEKSMGSCFQ LVFTPIDELF PDDAPLIASG FRDGVPSGRT 600 LDLASSLEVG STTQQTSADA SQDERNLRSV LTIAFQFPYE LHLQDSVATM ARQYVRSIVS 660 AVQRVSISLS PSRSGLNTGQ KIISGFPEAA TLVRWICQSY QYHLGLEIVP HSDEAGESLL 720 RMFWDHQDAI LCCSFKEKPV FTFGNQMGID MLETALIALQ DLSLDKIFDE PGRKTLYAEF 780 PKLMEQGYVY LPAGVCLSGM GRHVSYEQAV VWKVLGEDSN VHCLAFCFVN WSFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_19848A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021306737.1 | 0.0 | homeobox-leucine zipper protein HOX9 isoform X2 | ||||
Swissprot | A2Z8L4 | 0.0 | HOX9_ORYSI; Homeobox-leucine zipper protein HOX9 | ||||
TrEMBL | A0A2T7C5J0 | 0.0 | A0A2T7C5J0_9POAL; Uncharacterized protein | ||||
STRING | Sb01g019120.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_19848A |