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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Oropetium_20150105_19732A | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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| Family | LSD | ||||||||
| Protein Properties | Length: 63aa MW: 6734.84 Da PI: 9.5402 | ||||||||
| Description | LSD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-LSD1 | 35 | 2.4e-11 | 7 | 30 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24
Cg C+ +Ls P GA+sVRC+lC++
Oropetium_20150105_19732A 7 CGRCGEYLSVPSGARSVRCSLCHA 30
**********************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| TIGRFAMs | TIGR01053 | 1.6E-8 | 6 | 34 | IPR005735 | Zinc finger, LSD1-type |
| Pfam | PF06943 | 6.7E-10 | 7 | 30 | IPR005735 | Zinc finger, LSD1-type |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 63 aa Download sequence Send to blast |
MAPRTMCGRC GEYLSVPSGA RSVRCSLCHA ATRVERRPHH NGLHPSAVGF IRGLIGSILL 60 DY* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Oropetium_20150105_19732A |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | NP_001152418.1 | 6e-17 | uncharacterized protein LOC100286058 | ||||
| TrEMBL | A0A0A9G170 | 6e-17 | A0A0A9G170_ARUDO; Uncharacterized protein | ||||
| STRING | GRMZM2G120069_P01 | 2e-16 | (Zea mays) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP394 | 2 | 2 |
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Oropetium_20150105_19732A |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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