PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19661A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GeBP
Protein Properties Length: 373aa    MW: 39572.2 Da    PI: 5.023
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19661AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573104.77.5e-3373172297
                     DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfs 81 
                                lfqrlw++eDeiv+L+++ df+a++g+   +++ d++ fye ++++++  ++ksqlveK+rrLK+K++++v++ +  g +++f+
  Oropetium_20150105_19661A  73 LFQRLWTDEDEIVILRAFADFTAQRGTafASHQyDTTPFYEDMRGRLQTGFTKSQLVEKLRRLKRKYRNCVDRlRVAGANFTFR 156
                                79*************************9977778***************************************8889******* PP

                     DUF573  82 kehdqkifelskkiWg 97 
                                ++h+q ife+++ iW+
  Oropetium_20150105_19661A 157 SPHEQAIFEIARTIWR 172
                                ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.2E-3074171IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MFPTVDDPSA AGAGAMVSSS FPDADAYGNG DSDDLDFPAD PNPNSNASFS AAPPTPAAAA  60
ASAGGGSGER RPLFQRLWTD EDEIVILRAF ADFTAQRGTA FASHQYDTTP FYEDMRGRLQ  120
TGFTKSQLVE KLRRLKRKYR NCVDRLRVAG ANFTFRSPHE QAIFEIARTI WRPASDKHGR  180
DSDDEGNEEA LAVDAAAAAA GARANGESAK SPSSRRRGRR RRTADFPAAD AGETLLPAPM  240
PAMTTEVALP SFPQQAAMPM DGAITMDPAA GLPAALSAAA TAATTASSEN PILASLFKEM  300
IRSTLNIGAS TAPLGLEPPP AIPGLPMDGE KWRQQRILEL EVYLRRIALL QDQARAALEE  360
LRSAPPAGGM NT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19661A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0645991e-166BT064599.1 Zea mays full-length cDNA clone ZM_BFc0188M08 mRNA, complete cds.
GenBankEU9721161e-166EU972116.1 Zea mays clone 375368 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794014.11e-164probable transcription factor At3g04930
TrEMBLA0A2T7CC961e-163A0A2T7CC96_9POAL; Uncharacterized protein
TrEMBLA0A2T8I4R31e-163A0A2T8I4R3_9POAL; Uncharacterized protein
STRINGGRMZM2G026417_P011e-161(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97437123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.11e-38DNA-binding storekeeper protein-related transcriptional regulator