PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19546A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 366aa    MW: 39389.9 Da    PI: 8.3848
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19546AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY66.83.5e-21185243259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                +Dg++WrKYGqK+ kg+++pr+YYrC           ++r+a+d +v++ tY g Hnh+
  Oropetium_20150105_19546A 185 NDGCQWRKYGQKVAKGNPCPRAYYRCXXXxXXXXXXXLQRCAHDASVLVSTYDGAHNHP 243
                                8**************************9978888999*********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-22172243IPR003657WRKY domain
SuperFamilySSF1182902.48E-18177244IPR003657WRKY domain
PROSITE profilePS5081122.446179245IPR003657WRKY domain
SMARTSM007746.1E-20184244IPR003657WRKY domain
PfamPF031062.0E-16185243IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MQKREKKSTR SSSSLLMELN NRTRVLFEEV MRDDEADKLQ QRNYYPGLQV LGIDGEEAAA  60
AGRRGTGNEP PEPFLSLSLG TASAIPERGE ETSSPIGLGL ALGLRRSSFL GFGETDNGGS  120
PVVGAKRHRR TTSDDSGNGG AEDPEDAVAR RGRGKXXXXX XXXXXPPARP GRVSFRTRCS  180
AATLNDGCQW RKYGQKVAKG NPCPRAYYRC XXXXXXXXXX XLQRCAHDAS VLVSTYDGAH  240
NHPLTPYAXX XXXXXXXXXX XGSXXXXXXX XXXXXSLRPE ATTDDAPPLL AMPVAMLPPQ  300
SYAAAGSTAA APLSHQNPMM ANFLEKAVAD PKFRAAVMAA VASYVCEQCG GGTIGDLLAT  360
FPPPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-14172246275WRKY transcription factor 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19546A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143192226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-30WRKY DNA-binding protein 9