PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_19368A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MYB_related | ||||||||
Protein Properties | Length: 217aa MW: 22812.6 Da PI: 4.5147 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.8 | 1.6e-15 | 22 | 67 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l Oropetium_20150105_19368A 22 RGNFTVAEEETIIKLHGLLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 67 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.135 | 1 | 16 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 2.78E-20 | 3 | 73 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-10 | 3 | 29 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.182 | 17 | 71 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-13 | 21 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.4E-14 | 22 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.27E-11 | 24 | 67 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-21 | 30 | 68 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
LLRCGKSCRL RWINYLRPDL KRGNFTVAEE ETIIKLHGLL GNKWSKIAAC LPGRTDNEIK 60 NVWNTHLKKK VAQKEQQKAG ATNNEDGVAS GDAAATQITS SSASSSTITA NSSGVGGDAG 120 DQCGTSKEPD AIDIIPPLEL EPDIDISDML VDAPAGPLPA AAEPMPPSSP CSSSSLTTCG 180 VEHLIELPVI DIELDMWSII DGNGDSGARH GDATTVP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-19 | 3 | 71 | 40 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_19368A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679437 | 2e-74 | HF679437.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB31 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953532.1 | 9e-82 | myb-related protein Zm1 | ||||
Swissprot | P20024 | 2e-78 | MYB1_MAIZE; Myb-related protein Zm1 | ||||
TrEMBL | K3YTV8 | 2e-80 | K3YTV8_SETIT; Uncharacterized protein | ||||
STRING | Si017704m | 4e-81 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2154 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 1e-37 | myb domain protein 63 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_19368A |
Publications ? help Back to Top | |||
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