PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19306A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 186aa    MW: 19844.8 Da    PI: 4.9108
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19306AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.61.7e-063441055
                               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                               + RR+ri +++  L+el+P +    sk   Ka +L + ++Y++sLq
  Oropetium_20150105_19306A  3 QVRRERISERMRYLQELVPGC----SKVTGKAGMLDEIINYVQSLQ 44
                               67******************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.90E-7148No hitNo description
PROSITE profilePS5088812.684143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-4149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-12358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-12655IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MAQVRRERIS ERMRYLQELV PGCSKVTGKA GMLDEIINYV QSLQKQVEFL SMKIAASNPV  60
VSFDIVEDLF GRQLKQACNL AATPAMALPA GQLDPSCLRM STMPQGHLPA GSSGFGLEMV  120
VNSPYPPGPG GQMPPAAGGS DTSRLNVHGA AVWDIGSQNL FGGFDAQFQP VESDCLLADN  180
LKMEM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19306A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0412381e-105BT041238.1 Zea mays full-length cDNA clone ZM_BFc0191L13 mRNA, complete cds.
GenBankKJ7279451e-105KJ727945.1 Zea mays clone pUT6041 bHLH transcription factor (bHLH11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627481.18e-87transcription factor bHLH63
TrEMBLA0A0D9VK018e-89A0A0D9VK01_9ORYZ; Uncharacterized protein
STRINGLPERR02G23970.11e-89(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82523749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.13e-34cryptochrome-interacting basic-helix-loop-helix 1