PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19194A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family CO-like
Protein Properties Length: 369aa    MW: 40594.6 Da    PI: 6.104
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19194AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.54.8e-07546540
                   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                                C+ +++++  ++C+++   lC +C  + H+       Ht++
  Oropetium_20150105_19194A  5 LCDFCGKQRSMIYCRSDAASLCLSCDRNVHSAnalsrrHTRT 46
                               7*****************************657888889876 PP
2zf-B_box26.31.5e-084889540
                   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                                C++++++++   C d++  +C++C  ++H        H+++
  Oropetium_20150105_19194A 48 LCDRCGSQPAAVRCLDDNASFCQNCDWNGHDAasgaagHKRQ 89
                               7*****************************447778888876 PP
3CCT62.41.5e-21312355144
                        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                R+ al+RYkeK+k+RkF+KkirY+sRKa+A++R RvKGrF k+ 
  Oropetium_20150105_19194A 312 RDSALSRYKEKKKRRKFDKKIRYASRKARADTRRRVKGRFIKAG 355
                                899*************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.1E-13148IPR000315B-box-type zinc finger
PROSITE profilePS5011910.196148IPR000315B-box-type zinc finger
CDDcd000215.38E-6448No hitNo description
PROSITE profilePS501199.1294491IPR000315B-box-type zinc finger
PfamPF006431.5E-54889IPR000315B-box-type zinc finger
CDDcd000211.79E-64891No hitNo description
SMARTSM003360.0474991IPR000315B-box-type zinc finger
PfamPF062036.6E-17312354IPR010402CCT domain
PROSITE profilePS5101715.428312354IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MMAVLCDFCG KQRSMIYCRS DAASLCLSCD RNVHSANALS RRHTRTLLCD RCGSQPAAVR  60
CLDDNASFCQ NCDWNGHDAA SGAAGHKRQA INCYSGCPSS AELSRIWSFV MDIPAVAAEL  120
NCEDGISMMN IDDTSVSNHC GAMDDSRLLE IASTTLMSDP PTGDKLKPFI GSSSADGNNT  180
LPVAPDQPAG PVPVMPKAPD ATVNDKFNDG SIYEDFCVDD ADLTFENYEE LFGTSHIQTE  240
QLFDDAGIDC YFEMKEMLPS DSNEVCTFHP EHKYMQLKCS NMVSADSAMS NPGGRADSSL  300
CIPVRQVKSS SRDSALSRYK EKKKRRKFDK KIRYASRKAR ADTRRRVKGR FIKAGEAYDY  360
DPLSPRSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321325KKKRR
2321326KKKRRK
3322326KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19194A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827948.10.0zinc finger protein CONSTANS-LIKE 9-like
TrEMBLA0A2S3GT850.0A0A2S3GT85_9POAL; Uncharacterized protein
TrEMBLA0A2T7FBG30.0A0A2T7FBG3_9POAL; Uncharacterized protein
STRINGSi017374m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.42e-87CONSTANS-like 9