PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19150A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 342aa    MW: 37129.5 Da    PI: 4.4137
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19150AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox651e-2083136356
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                k++++t+eq++ Le+ Fe+++++  e+++eLA+klgL+ rqV vWFqNrRa++k
  Oropetium_20150105_19150A  83 KKRRLTPEQVHLLEKSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWK 136
                                5678*************************************************9 PP

2HD-ZIP_I/II132.61.4e-4282173192
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                ekkrrl+ eqv+lLE+sFeee+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk+++dal++++++L +++
  Oropetium_20150105_19150A  82 EKKRRLTPEQVHLLEKSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDN 165
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLreelk 92 
                                ++Lr+++ 
  Oropetium_20150105_19150A 166 HRLRSQVV 173
                                ****9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.14E-2076140IPR009057Homeodomain-like
PROSITE profilePS5007118.28578138IPR001356Homeobox domain
SMARTSM003891.1E-2081142IPR001356Homeobox domain
CDDcd000866.12E-2183139No hitNo description
PfamPF000465.5E-1883136IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.4E-2284145IPR009057Homeodomain-like
PRINTSPR000312.2E-6109118IPR000047Helix-turn-helix motif
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
PRINTSPR000312.2E-6118134IPR000047Helix-turn-helix motif
PfamPF021834.3E-18138180IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDSGRLIFNT TGSGAGQMLF LDCGMGGQAG GMFHRGLRYC GSDEGGGRPV SGLEEGRGIK  60
RPFFTSPDEL LEEEYYDEQL PEKKRRLTPE QVHLLEKSFE EENKLEPERK TELARKLGLQ  120
PRQVAVWFQN RRARWKTKQL ERDFDRLKAS FDALRADHDA LLQDNHRLRS QVVSLTEKLQ  180
EKENAEGGAS AAADATEFAA DVKSSALAVD AEDAAAAEVA FQAQQVKSED RLSTGSGGSA  240
VVDTDALLGA GGGLPAVDSS VESYFPGGDD HYNNACGVGH VDHHCAAEFQ SEEDDGAGSD  300
EGCSYYPDDT AAAAAAFFTG HAHHHVDDDE DDGPISWWMW N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19150A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0336161e-158BT033616.1 Zea mays full-length cDNA clone ZM_BFc0123J14 mRNA, complete cds.
GenBankBT0392221e-158BT039222.1 Zea mays full-length cDNA clone ZM_BFc0001I24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813024.11e-151homeobox-leucine zipper protein HOX16-like isoform X1
SwissprotQ6YWR41e-132HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBLA0A2T7FC041e-152A0A2T7FC04_9POAL; Uncharacterized protein
STRINGPavir.Ab02950.1.p1e-151(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-64homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]