PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_19150A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 342aa MW: 37129.5 Da PI: 4.4137 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65 | 1e-20 | 83 | 136 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe+++++ e+++eLA+klgL+ rqV vWFqNrRa++k Oropetium_20150105_19150A 83 KKRRLTPEQVHLLEKSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWK 136 5678*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 132.6 | 1.4e-42 | 82 | 173 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 ekkrrl+ eqv+lLE+sFeee+kLeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk+++dal++++++L +++ Oropetium_20150105_19150A 82 EKKRRLTPEQVHLLEKSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDN 165 69********************************************************************************** PP HD-ZIP_I/II 85 eeLreelk 92 ++Lr+++ Oropetium_20150105_19150A 166 HRLRSQVV 173 ****9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.14E-20 | 76 | 140 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.285 | 78 | 138 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-20 | 81 | 142 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.12E-21 | 83 | 139 | No hit | No description |
Pfam | PF00046 | 5.5E-18 | 83 | 136 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-22 | 84 | 145 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.2E-6 | 109 | 118 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 113 | 136 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.2E-6 | 118 | 134 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 4.3E-18 | 138 | 180 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001558 | Biological Process | regulation of cell growth | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MDSGRLIFNT TGSGAGQMLF LDCGMGGQAG GMFHRGLRYC GSDEGGGRPV SGLEEGRGIK 60 RPFFTSPDEL LEEEYYDEQL PEKKRRLTPE QVHLLEKSFE EENKLEPERK TELARKLGLQ 120 PRQVAVWFQN RRARWKTKQL ERDFDRLKAS FDALRADHDA LLQDNHRLRS QVVSLTEKLQ 180 EKENAEGGAS AAADATEFAA DVKSSALAVD AEDAAAAEVA FQAQQVKSED RLSTGSGGSA 240 VVDTDALLGA GGGLPAVDSS VESYFPGGDD HYNNACGVGH VDHHCAAEFQ SEEDDGAGSD 300 EGCSYYPDDT AAAAAAFFTG HAHHHVDDDE DDGPISWWMW N* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 138 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00323 | DAP | Transfer from AT3G01470 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_19150A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT033616 | 1e-158 | BT033616.1 Zea mays full-length cDNA clone ZM_BFc0123J14 mRNA, complete cds. | |||
GenBank | BT039222 | 1e-158 | BT039222.1 Zea mays full-length cDNA clone ZM_BFc0001I24 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813024.1 | 1e-151 | homeobox-leucine zipper protein HOX16-like isoform X1 | ||||
Swissprot | Q6YWR4 | 1e-132 | HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16 | ||||
TrEMBL | A0A2T7FC04 | 1e-152 | A0A2T7FC04_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab02950.1.p | 1e-151 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2609 | 38 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-64 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_19150A |
Publications ? help Back to Top | |||
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