PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19130A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family CPP
Protein Properties Length: 66aa    MW: 7446.5 Da    PI: 6.302
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19130AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR23.98.2e-085281741
                        TCR 17 YCeCfaagkkCseeCkCedCkNkee 41
                               YCeCfaa+++C+  C+C++C N+ e
  Oropetium_20150105_19130A  5 YCECFAAQVYCDG-CNCSNCGNNIE 28
                               *************.********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163413.642165IPR005172CRC domain
PfamPF036382.1E-5526IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
MPYWYCECFA AQVYCDGCNC SNCGNNIENE NMRKEAIETL LARNPLAFQP KIENGPSTLN  60
VRKRL*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19130A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623618.18e-27protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD13e-18TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLB8AFN86e-28B8AFN8_ORYSI; Uncharacterized protein
STRINGLPERR02G10060.15e-27(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2743022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.15e-08Tesmin/TSO1-like CXC domain-containing protein