PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19107A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 310aa    MW: 34194.5 Da    PI: 6.9315
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19107AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.2e-094184844
                               HHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHH CS
            Myb_DNA-binding  8 EdellvdavkqlGggtWktIartmg.......kgRtlkqcksrw 44
                               Ed++l + v+++G ++W t+ar ++         Rt + +k++w
  Oropetium_20150105_19107A 41 EDDILTQMVNKHGLNNWQTVARAIPdrnalqcRMRTNYALKEHW 84
                               9************************7777666667777777777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.8E-43382IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-93982IPR009057Homeodomain-like
SuperFamilySSF466891.09E-83983IPR009057Homeodomain-like
PROSITE profilePS500907.3643980IPR017877Myb-like domain
PfamPF139218.6E-74078No hitNo description
CDDcd001671.41E-84175No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MKQNRKRQMT IHARKMSTAS RREAVQNILK GPKADGHQRK EDDILTQMVN KHGLNNWQTV  60
ARAIPDRNAL QCRMRTNYAL KEHWRGPMKR KLDSYLASGL VEQVPDLHDD ISSAPDSKQS  120
DTPNDNAELS ERKQTSPALP TSPKSKEVCS EQGGNADSSG ECSDFTYVKG PARSAEVSER  180
IIAKSKQRAT AKKKLDFLST PVELKVCTSA PSLQSPLSKT EQMSPIVDKI SPSDVVQDDP  240
PNAPLKFANT FLSVTTGNHS KDVCSSELET PDPCSLDIHE ESILDLLDMS YCDDLMMDLP  300
SFPHGGSFI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_19107A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683278.12e-81snRNA-activating protein complex subunit 4 isoform X5
TrEMBLA0A0A9FY271e-98A0A0A9FY27_ARUDO; Uncharacterized protein
STRINGSi017903m8e-81(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142631723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.12e-07myb domain protein 70