PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_19054A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NAC | ||||||||
Protein Properties | Length: 98aa MW: 11511 Da PI: 7.5981 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 96.4 | 4.3e-30 | 10 | 95 | 1 | 83 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgy. 82 +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL+ ++ ++ + ewyfFs++dkky+tg+r+nrat++g Oropetium_20150105_19054A 10 VPPGFRFHPTDEELLYYYLRKKVSYEPIDL-DVIREIDLNKLEPWDLNDrcRIGTGPQdEWYFFSHKDKKYPTGTRTNRATTAGKm 94 69****************************.9***************842455554445********************8887743 PP NAM 83 W 83 W Oropetium_20150105_19054A 95 W 95 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-31 | 6 | 92 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.344 | 10 | 97 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.6E-14 | 11 | 95 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 98 aa Download sequence Send to blast |
MHPSSSPLSV PPGFRFHPTD EELLYYYLRK KVSYEPIDLD VIREIDLNKL EPWDLNDRCR 60 IGTGPQDEWY FFSHKDKKYP TGTRTNRATT AGKMWFV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-24 | 4 | 92 | 9 | 94 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_19054A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU953045 | 1e-82 | EU953045.1 Zea mays clone 1377565 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012702713.1 | 7e-60 | NAC domain-containing protein 76 | ||||
Swissprot | Q5Z6B6 | 2e-58 | NAC76_ORYSJ; NAC domain-containing protein 76 | ||||
TrEMBL | A0A1E5VY61 | 2e-59 | A0A1E5VY61_9POAL; NAC domain-containing protein 76 (Fragment) | ||||
STRING | Si017641m | 3e-59 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1597 | 38 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79580.3 | 1e-44 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_19054A |
Publications ? help Back to Top | |||
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