PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18991A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family BES1
Protein Properties Length: 391aa    MW: 40865.5 Da    PI: 8.9966
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18991AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822159.52.3e-493213410111
                     DUF822  10 kErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspes 92 
                                 ErEnn+ RERrRRaiaaki++GLRa+Gny+lpk++DnneVlkA c+eAGw+ve+DGttyrkg+kp+  + +++g ++s s++ 
  Oropetium_20150105_18991A  32 XERENNRNRERRRRAIAAKIFTGLRAYGNYQLPKHCDNNEVLKAVCNEAGWTVEPDGTTYRKGCKPPpAAGDHTGIFRSLSTSP 115
                                7******************************************************************9999********99998 PP

                     DUF822  93 slqsslkssalaspvesys 111
                                 + +s+++s+ +s ++s+s
  Oropetium_20150105_18991A 116 LYPLSPRASYNPSSASSSS 134
                                8886666666666555544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.1E-4731144IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MNGGGGGGGA GAGXXXXXXX XXXXXXXXXX XXERENNRNR ERRRRAIAAK IFTGLRAYGN  60
YQLPKHCDNN EVLKAVCNEA GWTVEPDGTT YRKGCKPPPA AGDHTGIFRS LSTSPLYPLS  120
PRASYNPSSA SSSSHITLGG GXXXXXXXXX XXXXSSSAAV AAGVDGGSNA LPWIKAMTST  180
GGGPSSFPSS YGDTVSQSAP VTPPTSSSPP FSPQLKKMAR WVENSNKPLA GSTAKALAPW  240
VTVTGGGSSS GKRCASSYTM PPSPSGVGAT ADPATWQPGF KASTTIGTGD KSPDFTFXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXA AHGAAVARDA AEAAEADQCK LSLGGSAAML  360
RAWEGEVIKE CADEELELTL GSSRTRADRA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A6e-234699391444Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B6e-234699391444Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C6e-234699391444Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D6e-234699391444Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18991A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1012298e-72AK101229.1 Oryza sativa Japonica Group cDNA clone:J033031H19, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2446246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19350.66e-25BES1 family protein