PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18920A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GATA
Protein Properties Length: 329aa    MW: 35819.4 Da    PI: 9.6034
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18920AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.2e-17175208134
                       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Oropetium_20150105_18920A 175 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 208
                                *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.8E-13166209No hitNo description
SMARTSM004016.1E-18169220IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.268173205IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-14173208IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.15E-14174206No hitNo description
PfamPF003202.4E-15175208IPR000679Zinc finger, GATA-type
PROSITE patternPS003440175200IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSTIYMSQLS TLPLIEGDQD QGLFPAFHTV KDHPILFPFM ISSPMDQHQA QNYGDQHLRQ  60
QFFAESNQQF NDHMKLSGSD VVFPTPSPFQ PTIQSIGSHM IQRSTYDPYD IENKHTNGST  120
SRWAVAPPAK MKIMRKETTS EYPEGGAARK PRRRAQAHQD ESEHQQQQQG IVRVCSDCNT  180
TKTPLWRSGP CGPKSLCNAC GIRQRKARRA MAAAAAAAAA RASNGGSAAT VSTSQETKQA  240
KKEKRAEVDR SLPFKKRCKM VTADQAATAA KAAITSPTSY QDHVVTGDSI AAAPGLQSKG  300
TPPAMFHADE ITNAAMLLMT LSCGLVRN*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters (By similarity). Influences the expression of nuclear encoded chloroplast-targeted genes. Regulates chloroplast development and promotes chlorophyll accumulation. Modulates plant architecture (e.g. height, length and width of leaf blades, and flowering tillers production) and represses tillering, probably by modulating number of cells. Promotes senescence. Involved in grain filling, panicle development and starch production (PubMed:23548780). {ECO:0000250|UniProtKB:Q9SZI6, ECO:0000269|PubMed:23548780}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18920A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light, nitrogen, and cytokinin (benzyladenine) treatments, but repressed by darkness and gibberellin (GA). {ECO:0000269|PubMed:23548780}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795730.11e-149putative GATA transcription factor 22
SwissprotQ6YW481e-124CGA1_ORYSJ; Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1
TrEMBLA0A2T7F3S61e-149A0A2T7F3S6_9POAL; Uncharacterized protein
STRINGBRADI3G08240.21e-131(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.12e-19GATA family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Behringer C,Schwechheimer C
    B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
    Front Plant Sci, 2015. 6: p. 90
    [PMID:25755661]