PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18853A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 841aa    MW: 92122.5 Da    PI: 6.2675
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18853AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS395.17.5e-1214658342374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                ++lL++cA+ v+++d + a +lL++++++asp+gd  qRla++f+++L+arla+++s++yk++  ++ +    ++ l+a++l+ 
  Oropetium_20150105_18853A 465 ETLLIHCAQSVATDDRRSAMELLKQIRQHASPNGDGDQRLAHCFANGLEARLAGNGSQIYKSFIITRFA---CTDLLKAYQLYL 545
                                789*****************************************************************9...9*********** PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLak 167
                                 ++P+ k+sh+ aNq+I++ave++++vHi+D++i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g   +e++eetg+ L++
  Oropetium_20150105_18853A 546 AACPFKKISHFFANQTIMNAVEKAKKVHIVDYGIYYGFQWPCLIQRLSNRPGGPPKLRITGIDTPRPGfrPAERIEETGRYLKD 629
                                *******************************************************************9**************** PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                                +A++++vpfef++ +a+r+e+++le+L+++++E l+Vn++++ ++l+desv  es+r+ vL+++++++P+v+++   + ++n++
  Oropetium_20150105_18853A 630 YAQTFNVPFEFQA-IASRFEAVQLEDLHIEKDELLIVNCMFKFKTLMDESVVAESPRNMVLNTIRKMNPHVFIHGIINGSYNAP 712
                                *************.7********************************************************************* PP

                       GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                                 F+ rf eal  ysa+fd+le+++pr++e+r  +E +l+gre+ nv++ceg er er et+++W+ r ++aGFk++p++++++k
  Oropetium_20150105_18853A 713 FFVSRFREALFQYSAIFDMLETNIPRDNEQRLLIESALFGREAINVISCEGLERLERPETYKQWQVRNQRAGFKQLPMNQDIMK 796
                                ************************************************************************************ PP

                       GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 a+  +r+++++ + ++e++ +l++gWk+r L+++S W+
  Oropetium_20150105_18853A 797 RAREKVRNYHKN-FIIDEDNRWLLQGWKGRILMALSTWK 834
                                **********66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.138438815IPR005202Transcription factor GRAS
PfamPF035142.6E-118465834IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MLIAAGRGAR GCMLCGGGGA GVPVPGFVSM VMDAGVHELC TLLPGSKRDG HLPIYPQIGA  60
AAAAANNGFT ADELEALLFR PPDGIATTAD GGAGGGYLNV APTTVVPPAS TTRASPPRDA  120
SAPAGQPDDS EAFSDIVLGY INRILMAEDI DDKFEHYPEH GALLAAEKPF LEILTDQPSS  180
SGGSAVESPD GSSVTCGSLG SCGCAAAAVP NGLGAVRTPL LDFPSAPFLQ PQELSRDLSP  240
ESSVVEAGDA WPYDPTELYQ LQTKPLPEAL LSQSSSFASS NGSGLAVSDG FESLLSSPGF  300
MPDVGFTEFA LQSQQAMHFC RGLEEASRFL PDETKLVIDL EKSASVPSLL SSNVKEEKFV  360
EVKTEKADVE AATHRGKKHF YGDDLDAEEG RCTKHSAPAI DTDHLVREMM DKVLLCNGET  420
CSKGVKELRE ALQNEKHTHG GHGKGSGHGK GRGKKQPKKE VVDLETLLIH CAQSVATDDR  480
RSAMELLKQI RQHASPNGDG DQRLAHCFAN GLEARLAGNG SQIYKSFIIT RFACTDLLKA  540
YQLYLAACPF KKISHFFANQ TIMNAVEKAK KVHIVDYGIY YGFQWPCLIQ RLSNRPGGPP  600
KLRITGIDTP RPGFRPAERI EETGRYLKDY AQTFNVPFEF QAIASRFEAV QLEDLHIEKD  660
ELLIVNCMFK FKTLMDESVV AESPRNMVLN TIRKMNPHVF IHGIINGSYN APFFVSRFRE  720
ALFQYSAIFD MLETNIPRDN EQRLLIESAL FGREAINVIS CEGLERLERP ETYKQWQVRN  780
QRAGFKQLPM NQDIMKRARE KVRNYHKNFI IDEDNRWLLQ GWKGRILMAL STWKPDHRSS  840
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-554688348375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18853A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004970541.10.0scarecrow-like protein 9
TrEMBLA0A1E5VF220.0A0A1E5VF22_9POAL; Scarecrow-like protein 9
STRINGPavir.Eb03680.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125183137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-179GRAS family protein