PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_18795A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | NF-YB | ||||||||
Protein Properties | Length: 173aa MW: 18618.7 Da PI: 5.7253 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 160.7 | 2.1e-50 | 17 | 120 | 1 | 94 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtse..........asdkcqrekrktingddllwalatl 74 vreqdrflPian+srimkk++Pan+ki+kdaket+qecvsefisfvts+ asdkcq+ekrktingddllwa+atl Oropetium_20150105_18795A 17 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSDdsdfavgafrASDKCQKEKRKTINGDDLLWAMATL 100 69*********************************************965555555555899********************** PP NF-YB 75 Gfedyveplkvylkkyrele 94 Gfe+yv+plk yl+kyre + Oropetium_20150105_18795A 101 GFEEYVDPLKNYLQKYREGD 120 *****************965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.1E-49 | 16 | 135 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 8.38E-34 | 20 | 127 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.5E-22 | 23 | 97 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 6.4E-19 | 51 | 69 | No hit | No description |
PRINTS | PR00615 | 6.4E-19 | 80 | 98 | No hit | No description |
PRINTS | PR00615 | 6.4E-19 | 99 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MADDSGSHDG GGGGGGVREQ DRFLPIANIS RIMKKAVPAN GKIAKDAKET LQECVSEFIS 60 FVTSDDSDFA VGAFRASDKC QKEKRKTING DDLLWAMATL GFEEYVDPLK NYLQKYREGD 120 SKLSTKAGEG PTKKDAMNPL GGTSSSNNQL VQHGVYNQGM GYMQPQYHNG DA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n1j_A | 3e-44 | 18 | 118 | 3 | 93 | NF-YB |
4awl_B | 3e-44 | 18 | 118 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
4csr_A | 3e-44 | 18 | 118 | 4 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_18795A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB095438 | 1e-65 | AB095438.1 Oryza sativa Japonica Group OsHAP3A mRNA for HAP3, complete cds. | |||
GenBank | AP003271 | 1e-65 | AP003271.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0506B12. | |||
GenBank | AP004366 | 1e-65 | AP004366.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0460C04. | |||
GenBank | AP014957 | 1e-65 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY332466 | 1e-65 | AY332466.1 Oryza sativa (japonica cultivar-group) CCAAT-binding protein (CCB1) mRNA, complete cds. | |||
GenBank | CP012609 | 1e-65 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001278514.1 | 1e-93 | uncharacterized protein LOC100285917 | ||||
Swissprot | P25209 | 2e-80 | NFYB_MAIZE; Nuclear transcription factor Y subunit B | ||||
TrEMBL | B6UBN3 | 2e-92 | B6UBN3_MAIZE; CCAAT-HAP3 transcription factor | ||||
STRING | GRMZM2G303465_P04 | 4e-93 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53340.1 | 2e-61 | nuclear factor Y, subunit B10 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_18795A |
Publications ? help Back to Top | |||
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