PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_18730A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | LBD | ||||||||
Protein Properties | Length: 258aa MW: 27036.5 Da PI: 6.1554 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.3 | 8.4e-41 | 63 | 162 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+k+l ++pe er da+sslvyeA+ r+rdPvyG++g i+ lq Oropetium_20150105_18730A 63 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLEVPEVERADAASSLVYEANLRLRDPVYGCMGAISVLQ 146 7*********************************************************************************** PP DUF260 85 qqleqlkaelallkee 100 qq++ l+ael+++++e Oropetium_20150105_18730A 147 QQVNALEAELDAVRAE 162 ***********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.293 | 62 | 163 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-40 | 63 | 160 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MSTESSACWS LTRERLDEIG KKIKREPDAT GIAAATASAS TALVENPVPR SLGLGGALNT 60 VTPCAACKLL RRRCAQECPF APYFSPHEPH KFAAVHKVFG ASNVSKMLLE VPEVERADAA 120 SSLVYEANLR LRDPVYGCMG AISVLQQQVN ALEAELDAVR AEIFKHRYRQ AGAGAGLTDD 180 DVQATARFVA PHPPLLAGDV VSVAEAGQDI ANPAGVPAGM SAAAASAVYI AKAVEQPSST 240 TDHYSSLNTS EHASYFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-43 | 63 | 166 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-43 | 63 | 166 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_18730A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121919 | 1e-132 | AK121919.1 Oryza sativa Japonica Group cDNA clone:J033106D14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970407.1 | 1e-115 | LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 1e-68 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A1E5VHX5 | 1e-123 | A0A1E5VHX5_9POAL; LOB domain-containing protein 15 | ||||
STRING | Pavir.Eb03580.1.p | 1e-119 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 1e-69 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_18730A |
Publications ? help Back to Top | |||
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