PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18634A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 419aa    MW: 45639.9 Da    PI: 6.5242
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18634AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.31.9e-09185225545
                                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                                k  rr+++NReAAr+sR+RKka+i++Le    +L++  ++L
  Oropetium_20150105_18634A 185 KMLRRLAQNREAARKSRLRKKAYIQNLESSRLKLTQLEQEL 225
                                7789************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.3E-7181244IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.324183227IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.74E-7185228No hitNo description
PfamPF001701.3E-6185225IPR004827Basic-leucine zipper domain
CDDcd147087.84E-21185237No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-7186229No hitNo description
PROSITE patternPS000360188203IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MESRRGGAAA AAPEDAGAPM PTFGPPHHQH ATHTDVNSMQ PSRVTDFGAY TQSAGFRIED  60
LANLNTNTLY NLKPSIHTNN NNPLQIGSYG KVFRPYSIYA APTVPVRIDP SSLAQQTGAQ  120
PNLVASTAGN FENWGESAMA DASPMTDTST DPDTDEGNQM FEQGQLAGPT ASDSSDKSRE  180
KLDQKMLRRL AQNREAARKS RLRKKAYIQN LESSRLKLTQ LEQELQRARQ QGILISSSGD  240
QPQSTSGNGA LAFDMEYARW LEEHNKHTTE LRVAVNAHAG DNDLRCILLV GQLEPLTDQQ  300
LVGISNLQQS SQQAEDALSQ GMEALQQSLA ETLASGLLGP AGSSGNVANY MGQMAMAMGK  360
LGTLENFLRQ ADNLRLQTLQ QMQRILTTRQ SARALLAISD YFSRLRALSS LWLARPRE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18634A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458658.10.0transcription factor TGAL1
SwissprotQ415580.0HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLC5XMK20.0C5XMK2_SORBI; Uncharacterized protein
STRINGSb03g037560.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.42e-99bZIP family protein