PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18494A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family GRAS
Protein Properties Length: 400aa    MW: 42363.8 Da    PI: 5.2525
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18494AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.25e-92343992374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                +el+l+cA+ ++ gd   a+++++ l   a p+gd+  Rla++f++ALa+r+ +  ++  +     +t       + +a+ +++
  Oropetium_20150105_18494A  34 RELVLACADLLQRGDVGGARRVVEVLLSVADPRGDAADRLAHHFARALARRVDG--KGGGE----GTT------PSPSAYLAYN 105
                                5789**************************************************..22222....222......23467889** PP

                       GRAS  86 evsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetger 164
                                ++ P+l+f+hltaNqaIlea+++   +rvHi+D+d+ +G+QWp+Llqa+a+R+    gpp++RiTg g     +++ l +tg+r
  Oropetium_20150105_18494A 106 QIAPFLRFAHLTANQAILEAAASGaaRRVHILDLDAAHGVQWPPLLQAIAERAdpdVGPPEVRITGAGT----DRDVLLRTGDR 185
                                *******************99876689*************************977778***********....*********** PP

                       GRAS 165 LakfAeelgvpfefnvl...vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe 245
                                L+ fA++l++pf+f++l     ++l++ +   L+++++E+la+n+vl lhrl  ++++l++    +L  vks++P vv ++e+e
  Oropetium_20150105_18494A 186 LRAFASSLNLPFRFHPLllsCPTQLAAGRAAGLELHQDETLAINCVLFLHRLG-SEGELAD----FLTWVKSMNPAVVAIAERE 264
                                *****************54434467777999*********************8.7777777....******************* PP

                       GRAS 246 adhnse......sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaG 323
                                a+ ++       ++ +r++ a++yysa+fd+lea++p+ s +r +vE+e+lg+eiv +v    a+     + +e W ++ + aG
  Oropetium_20150105_18494A 265 ASVGGDddcpdnNLPRRVAVAMDYYSAVFDALEATVPPGSADRLSVEHEVLGQEIVAAVDPGPAA-GSWSRCFEWWASAARGAG 347
                                9995555777779**********************************************998887.7778889*********** PP

                       GRAS 324 Fkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                ++p pls++a++qa+ llr ++ s+g+ vee +g+ +lgW++rpL+svS+W+
  Oropetium_20150105_18494A 348 LSPQPLSSFAVAQARFLLRLHYpSEGHVVEEARGACFLGWQTRPLMSVSSWQ 399
                                ***************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.0097378IPR005202Transcription factor GRAS
PfamPF035141.7E-8934399IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010223Biological Processsecondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MLGAPPGGDS DDDGAAKAQE KRVDPVAAPP SSPRELVLAC ADLLQRGDVG GARRVVEVLL  60
SVADPRGDAA DRLAHHFARA LARRVDGKGG GEGTTPSPSA YLAYNQIAPF LRFAHLTANQ  120
AILEAAASGA ARRVHILDLD AAHGVQWPPL LQAIAERADP DVGPPEVRIT GAGTDRDVLL  180
RTGDRLRAFA SSLNLPFRFH PLLLSCPTQL AAGRAAGLEL HQDETLAINC VLFLHRLGSE  240
GELADFLTWV KSMNPAVVAI AEREASVGGD DDCPDNNLPR RVAVAMDYYS AVFDALEATV  300
PPGSADRLSV EHEVLGQEIV AAVDPGPAAG SWSRCFEWWA SAARGAGLSP QPLSSFAVAQ  360
ARFLLRLHYP SEGHVVEEAR GACFLGWQTR PLMSVSSWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-454039826378Protein SCARECROW
5b3h_A3e-454039825377Protein SCARECROW
5b3h_D3e-454039825377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18494A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806722.10.0protein MONOCULM 1
SwissprotQ84MM91e-148MOC_ORYSJ; Protein MONOCULM 1
TrEMBLW8VJT60.0W8VJT6_9POAL; Lateral suppressor
STRINGPavir.J22770.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.13e-80GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]