PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18481A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 341aa    MW: 36588.3 Da    PI: 7.7211
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18481AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_126.11.8e-0879101325
                                XXCHHHCHHHHHHHHHHHHHHHH CS
                     bZIP_1   3 elkrerrkqkNReAArrsRqRKk 25 
                                + k+ rr+++NReAAr+sR+RKk
  Oropetium_20150105_18481A  79 DAKALRRLAQNREAARKSRLRKK 101
                                68999*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.0E-672101No hitNo description
PROSITE patternPS0003608499IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.0E-6135168No hitNo description
PfamPF141442.7E-27140222IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MHVVVEPGPN NKQGGSMANS NMVSDTNAGP SKRPPPSSSG PPPSSKPTPG VVIKRESSSK  60
GSGTPSTSGH QEGPSRTPDA KALRRLAQNR EAARKSRLRK KGAVFGYGAL SGSGIGGLSP  120
EAAWFDAEHA RWVEEHGKIM RHLREALEEE QQQQQQQHAD DDAQLRQMVD AAVAHHGVLV  180
ELKAAVARAD AFHLVSGTWV SAAERCFLWI AGFRPTDLIK VAARHAEPLT EPQAMAVCGL  240
QQWAREAEAA LDHELHAMHC SVSEAVSSDA TALLCPYPDV PSYMATMSLA IAKLASLETF  300
VIQSARCFLA IADYSHRLRA LSELWHTRPR QETVTAPAVG *
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18481A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0041842e-47AP004184.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1225_F07.
GenBankAP0149582e-47AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126102e-47CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012704240.11e-159transcription factor TGAL9 isoform X4
TrEMBLA0A368PH051e-157A0A368PH05_SETIT; Uncharacterized protein
TrEMBLA0A368PI001e-157A0A368PI00_SETIT; Uncharacterized protein
STRINGPavir.J04905.1.p1e-142(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27323669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.12e-55bZIP family protein