PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_18450A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | bZIP | ||||||||
Protein Properties | Length: 166aa MW: 18364.5 Da PI: 8.3353 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.7 | 3.8e-11 | 77 | 124 | 5 | 52 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 ++ rr+++NRe+ArrsR RK+ ++ L v+eL + N++L el++ Oropetium_20150105_18450A 77 RKKRRLASNRESARRSRVRKQRRLGDLSSQVAELREMNQRLLVELNRV 124 6889**************************************999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 5.2E-9 | 72 | 124 | No hit | No description |
SMART | SM00338 | 7.6E-9 | 73 | 137 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.749 | 75 | 138 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.7E-8 | 77 | 123 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 7.47E-9 | 77 | 127 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 80 | 95 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MQHNCVGVGT LACLSSFDFT SSFLLQNDPY GFGLLDLVAG PPYDSCKGST TISSSLPPPA 60 GTTADDNRGR RSSNDERKKR RLASNRESAR RSRVRKQRRL GDLSSQVAEL REMNQRLLVE 120 LNRVIAKHAR IARENAELRE EACDLLRRLN EMEVEEGAEE GANST* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 67 | 78 | RGRRSSNDERKK |
2 | 89 | 95 | RRSRVRK |
3 | 89 | 96 | RRSRVRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_18450A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014660928.1 | 1e-49 | basic leucine zipper 8 | ||||
TrEMBL | K3YXV1 | 3e-48 | K3YXV1_SETIT; Uncharacterized protein | ||||
STRING | Si019099m | 4e-49 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12742 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13600.1 | 2e-06 | basic leucine-zipper 58 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_18450A |