PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18403A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ARR-B
Protein Properties Length: 633aa    MW: 68721.4 Da    PI: 6.7209
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18403AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.56.1e-28205258155
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ +t+e+v+SHLQkYRl
  Oropetium_20150105_18403A 205 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVENITRENVASHLQKYRL 258
                                79*******************.********************************8 PP
2Response_reg79.61e-26251331109
                                EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTT CS
               Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahge 82 
                                vl vdD+p+ ++ll+++l++ +y +v+++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a++e
  Oropetium_20150105_18403A  25 VLAVDDDPTCLKLLEVLLRRCKY-HVTTTGQAATALKLLRENKdqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANEE 106
                                799********************.***************888889*******************87754.558*********** PP

                                HHHHHHHHHTTESEEEESS--HHHHHH CS
               Response_reg  83 eedalealkaGakdflsKpfdpeelvk 109
                                 +++ + +  Ga d+l Kp+  e+l++
  Oropetium_20150105_18403A 107 TSTVMKGITHGACDYLLKPVRLEQLRT 133
                                ************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.3E-1861632IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.6E-4122157No hitNo description
SuperFamilySSF521725.69E-3522143IPR011006CheY-like superfamily
SMARTSM004482.7E-3223135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.86724139IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.1E-2425134IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.63E-2726138No hitNo description
SuperFamilySSF466896.09E-20202262IPR009057Homeodomain-like
PROSITE profilePS5129411.34202261IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-29203263IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-24205258IPR006447Myb domain, plants
PfamPF002492.3E-6207257IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MTVEEVKPLG KANGGKDQFP VGMRVLAVDD DPTCLKLLEV LLRRCKYHVT TTGQAATALK  60
LLRENKDQFD LVISDVHMPD MDGFKLLELV GLEMDLPVIM LSANEETSTV MKGITHGACD  120
YLLKPVRLEQ LRTIWQHVVR RRGCDAKNHG NVNDNDGKKA MVAEGENGGA NRKRTSRKGR  180
DENGDDGDDS DENSNENGDS STQKKPRVVW SVELHRKFVA AVNQLGIDKA VPKKILDLMN  240
VENITRENVA SHLQKYRLYL KRLSADASRQ ANLTAALGGR NPACINMGLE QFKHYSAYGR  300
YRPVPTMNHS QPNNLLVLAR MNSPSAFGMH GLLPSQPLQV GYTQNNLSTP LGNVGGMSNG  360
NLIGGANMTL QDNSKCFPTG PSGNSFANIS NATPLAPANS LPLQSLEPSN QQHLGRMHSS  420
SADPFSNSFV VESPPFPDLG RCNTSWPTAV SSSIQELGAK DSMSQATLHV NAPKVEPHSS  480
FAEPTGQIPL LGNEIHSQVN SLARNSLSMP FNQDSMPFSY GSSTNSREIL KNNITVSNSG  540
INTSLPNLRI DSSIVPRQAI DVGNTGGVPP LQDGRIAQQT VNSQLNYNTE LMGTSRLQGG  600
LSGGLDDIVV DMFRPEHTEA GIPFIETDWE LV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-25201264164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18403A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682995.10.0two-component response regulator ORR24
SwissprotQ6H8050.0ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLK3YQT60.0K3YQT6_SETIT; Two-component response regulator
STRINGSi016630m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-112response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]