PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_18311A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 255aa MW: 28851.6 Da PI: 7.2443 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.8 | 1.2e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvtfskRr g+lKKA+EL vLCda+v v+ifsstgk++ey+s Oropetium_20150105_18311A 9 KRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 75.7 | 1.2e-25 | 71 | 171 | 1 | 100 |
K-box 1 yqkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 yq++++++ e ++ ++ e++++k+e+++L++ +R++ G+dL+sL+l +++ LeqqLe s++k+R++K+ell +q+++l++k Oropetium_20150105_18311A 71 YQHTTSNHfHEINHDQQIFLEMTRMKDEVDKLETGIRRFTGDDLSSLTLSDINDLEQQLEFSVNKVRTRKHELLSQQLDNLRRK 154 56666666678888999999**************************************************************** PP K-box 84 ekelqeenkaLrkklee 100 e+ l++en +L ++++e Oropetium_20150105_18311A 155 EHILEDENSMLGRMINE 171 ***********999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.198 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.09E-32 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.10E-43 | 2 | 78 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.6E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.0E-24 | 81 | 169 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.603 | 85 | 175 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008360 | Biological Process | regulation of cell shape | ||||
GO:0019252 | Biological Process | starch biosynthetic process | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm | ||||
GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGRGKIEIKR IENATNRQVT FSKRRGGLLK KANELAVLCD ARVGVVIFSS TGKMFEYCSP 60 TSSLRELIEQ YQHTTSNHFH EINHDQQIFL EMTRMKDEVD KLETGIRRFT GDDLSSLTLS 120 DINDLEQQLE FSVNKVRTRK HELLSQQLDN LRRKEHILED ENSMLGRMIN ENQQNHLAVG 180 RGDLKLTEMP PLAMLPPAAF GQAYYGGESS SSTALQLMSA APQLHHHGGG GFRLQPTQPN 240 LQDFHHGHHG LQLW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-19 | 1 | 85 | 1 | 83 | MEF2C |
5f28_B | 8e-19 | 1 | 85 | 1 | 83 | MEF2C |
5f28_C | 8e-19 | 1 | 85 | 1 | 83 | MEF2C |
5f28_D | 8e-19 | 1 | 85 | 1 | 83 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_18311A |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020393159.1 | 1e-139 | MADS-box protein ZMM17 isoform X1 | ||||
Refseq | XP_020393160.1 | 1e-139 | MADS-box protein ZMM17 isoform X1 | ||||
Refseq | XP_020393161.1 | 1e-139 | MADS-box protein ZMM17 isoform X1 | ||||
Swissprot | Q8VWM8 | 1e-138 | M17_MAIZE; MADS-box protein ZMM17 | ||||
TrEMBL | A0A1D6H1J3 | 1e-138 | A0A1D6H1J3_MAIZE; Zea mays MADS17 | ||||
TrEMBL | A0A3L6ESV6 | 1e-138 | A0A3L6ESV6_MAIZE; MADS-box protein ZMM17 | ||||
STRING | Sb04g004736.1 | 1e-136 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1850 | 37 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 6e-52 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_18311A |