PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_18273A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NF-YA
Protein Properties Length: 304aa    MW: 32444.6 Da    PI: 8.4623
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_18273AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA38.53.9e-121721933758
                  CBFB_NFYA  37 pylheSRhkhAlrRpRgsgGrF 58 
                                pylheSRh hAlrR+RgsgGrF
  Oropetium_20150105_18273A 172 PYLHESRHLHALRRARGSGGRF 193
                                8********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.3E-5143196IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.1E-10160193IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115215.416172196IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MMSFRSHELG FGQFAAAANS NGAPPPPWWA GAPPHQMLYG EPVGQRKSAQ KRFQVVPGGS  60
QALPEPMVPQ TPATAKAVQQ QERGFPDGVK VSMAPRGKGE KGSDHSATVV LQSPLALYSG  120
RLELGVGQSM ISSKNPYADQ HYGLIAPYGV GAPPCGRMLM PLTMPADAPI YPYLHESRHL  180
HALRRARGSG GRFLNTKKES NGEFAGAGGK KTFSNPLMRQ AASPSSEIHQ QSELGTLSSV  240
SSLSGSEVSS MYDNEDVDHY HSFDQLRTPF FTPLPSLVDI EHGAGNPFKW AATSEGCCDL  300
LKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_18273A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004963196.11e-116nuclear transcription factor Y subunit A-10
RefseqXP_022680516.11e-116nuclear transcription factor Y subunit A-10
TrEMBLA0A0A9CZS61e-119A0A0A9CZS6_ARUDO; Uncharacterized protein
STRINGSi022607m1e-115(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.18e-18nuclear factor Y, subunit A2