PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Oropetium_20150105_18254A | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
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Family | TCP | ||||||||
Protein Properties | Length: 270aa MW: 29140.9 Da PI: 8.2216 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 109.1 | 6.7e-34 | 34 | 154 | 1 | 105 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec 73 aag+kdrhsk+ T++g+RdRRvRls+++a++f+d+qd+LG+d++sk+ieWL+ +a +ai++l+++ + + + Oropetium_20150105_18254A 34 AAGGKDRHSKVVTARGLRDRRVRLSVPTAIQFYDIQDRLGVDQPSKAIEWLIGAAAAAIDALPSLdcssfalpdpsP----QPA 113 689**************************************************************999998865421....222 PP TCP 74 .eaesssssasnsssg.........kaaksaakskksqksaa 105 a++++s++++s+ + +a+++ ++ ++q++++ Oropetium_20150105_18254A 114 aAADAEVSTSEASK-DggafaellhYSANDDDNPMQQQQQPT 154 22233333333222.235688888855555555555555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 7.8E-32 | 36 | 151 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.562 | 37 | 95 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MEEVGMEKTA CKRPRAALDG AVAWRTCRRV ARAAAGGKDR HSKVVTARGL RDRRVRLSVP 60 TAIQFYDIQD RLGVDQPSKA IEWLIGAAAA AIDALPSLDC SSFALPDPSP QPAAAADAEV 120 STSEASKDGG AFAELLHYSA NDDDNPMQQQ QQPTLSYYPA QQPPSSHVTP RISSFRTTIP 180 QLTCFLQEQQ HRPAVVFDRG TLQSNAAAVP APLWPPTQHP CLLQQRITSA SADAAGLPFF 240 LGGGAPPATT TITAERRMQL WDFKQERKT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-21 | 42 | 96 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-21 | 42 | 96 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Oropetium_20150105_18254A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726804 | 2e-84 | KJ726804.1 Zea mays clone pUT3063 TCP transcription factor (TCP38) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810054.1 | 1e-110 | transcription factor PCF8-like | ||||
Swissprot | A2ZMR9 | 2e-74 | PCF8_ORYSI; Transcription factor PCF8 | ||||
TrEMBL | A0A3L6RAN9 | 1e-110 | A0A3L6RAN9_PANMI; Transcription factor PCF8 | ||||
STRING | Pavir.Ca02949.1.p | 1e-115 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11553 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 6e-22 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Oropetium_20150105_18254A |